Hb_010334_050

Information

Type -
Description -
Location Contig10334: 30651-31328
Sequence    

Annotation

kegg
ID rcu:RCOM_0811140
description hypothetical protein
nr
ID XP_002518664.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RY80
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0811140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010334_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000000_200 0.0742969618 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
3 Hb_116190_010 0.0850659392 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
4 Hb_000609_020 0.0901501255 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_000373_060 0.099424582 - - PREDICTED: extensin-3 [Camelina sativa]
6 Hb_003861_090 0.1208093266 - - adenylsulfate kinase, putative [Ricinus communis]
7 Hb_008376_020 0.1221358956 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
8 Hb_000645_250 0.1245376518 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
9 Hb_000847_120 0.1380025387 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
10 Hb_015978_010 0.1416611982 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
11 Hb_099157_010 0.1434145322 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
12 Hb_032223_020 0.1452192461 - - ATP binding protein, putative [Ricinus communis]
13 Hb_006499_020 0.1495891896 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_000226_110 0.1498460389 - - -
15 Hb_000751_060 0.1514506686 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
16 Hb_168319_060 0.1559823283 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
17 Hb_060152_010 0.1567685209 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
18 Hb_006277_030 0.1576231156 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006501_100 0.1604887781 - - malic enzyme, putative [Ricinus communis]
20 Hb_000668_050 0.1608151424 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010334_050 Hb_010334_050 Hb_000000_200 Hb_000000_200 Hb_010334_050--Hb_000000_200 Hb_116190_010 Hb_116190_010 Hb_010334_050--Hb_116190_010 Hb_000609_020 Hb_000609_020 Hb_010334_050--Hb_000609_020 Hb_000373_060 Hb_000373_060 Hb_010334_050--Hb_000373_060 Hb_003861_090 Hb_003861_090 Hb_010334_050--Hb_003861_090 Hb_008376_020 Hb_008376_020 Hb_010334_050--Hb_008376_020 Hb_000000_200--Hb_000609_020 Hb_000000_200--Hb_008376_020 Hb_000847_120 Hb_000847_120 Hb_000000_200--Hb_000847_120 Hb_000645_250 Hb_000645_250 Hb_000000_200--Hb_000645_250 Hb_099157_010 Hb_099157_010 Hb_000000_200--Hb_099157_010 Hb_116190_010--Hb_000373_060 Hb_116190_010--Hb_003861_090 Hb_006499_020 Hb_006499_020 Hb_116190_010--Hb_006499_020 Hb_000226_110 Hb_000226_110 Hb_116190_010--Hb_000226_110 Hb_168561_010 Hb_168561_010 Hb_116190_010--Hb_168561_010 Hb_000609_020--Hb_008376_020 Hb_000609_020--Hb_000847_120 Hb_000609_020--Hb_000645_250 Hb_000609_020--Hb_099157_010 Hb_000373_060--Hb_003861_090 Hb_000373_060--Hb_006499_020 Hb_000373_060--Hb_000226_110 Hb_000373_060--Hb_000645_250 Hb_003861_090--Hb_006499_020 Hb_003858_080 Hb_003858_080 Hb_003861_090--Hb_003858_080 Hb_003861_090--Hb_000226_110 Hb_008376_020--Hb_000847_120 Hb_001004_130 Hb_001004_130 Hb_008376_020--Hb_001004_130 Hb_008376_020--Hb_000645_250 Hb_006573_250 Hb_006573_250 Hb_008376_020--Hb_006573_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.550953 15.0671 23.7246 0.0711513 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.118232 36.8553 16.3757

CAGE analysis