Hb_010337_040

Information

Type -
Description -
Location Contig10337: 51017-51448
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01326: 42777-51426 , PASA_asmbl_01328: 51445-51846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010337_040 0.0 - - -
2 Hb_000453_020 0.1250939939 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_000482_120 0.1330500015 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
4 Hb_000327_320 0.1369976104 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
5 Hb_000574_170 0.1375433535 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
6 Hb_000395_310 0.1402478729 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_005784_010 0.1411914661 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
8 Hb_012132_050 0.1432675502 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
9 Hb_002894_080 0.1450972633 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001951_080 0.1457561461 - - O-acetyltransferase, putative [Ricinus communis]
11 Hb_007904_280 0.1543835536 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
12 Hb_009785_030 0.1560451629 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
13 Hb_003488_040 0.1569723951 transcription factor TF Family: NF-YB nuclear transcription factor YB7 [Populus nigra x Populus x canadensis]
14 Hb_000345_550 0.1573353314 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
15 Hb_002388_070 0.1576365334 - - ring finger protein, putative [Ricinus communis]
16 Hb_004917_020 0.1594574534 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
17 Hb_009783_010 0.1609187228 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
18 Hb_000093_010 0.1623486076 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
19 Hb_007101_070 0.1624904024 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
20 Hb_003086_030 0.1638178514 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_010337_040 Hb_010337_040 Hb_000453_020 Hb_000453_020 Hb_010337_040--Hb_000453_020 Hb_000482_120 Hb_000482_120 Hb_010337_040--Hb_000482_120 Hb_000327_320 Hb_000327_320 Hb_010337_040--Hb_000327_320 Hb_000574_170 Hb_000574_170 Hb_010337_040--Hb_000574_170 Hb_000395_310 Hb_000395_310 Hb_010337_040--Hb_000395_310 Hb_005784_010 Hb_005784_010 Hb_010337_040--Hb_005784_010 Hb_000453_020--Hb_000482_120 Hb_003029_120 Hb_003029_120 Hb_000453_020--Hb_003029_120 Hb_003488_040 Hb_003488_040 Hb_000453_020--Hb_003488_040 Hb_002184_080 Hb_002184_080 Hb_000453_020--Hb_002184_080 Hb_012539_100 Hb_012539_100 Hb_000453_020--Hb_012539_100 Hb_000692_100 Hb_000692_100 Hb_000482_120--Hb_000692_100 Hb_000482_120--Hb_003029_120 Hb_001855_020 Hb_001855_020 Hb_000482_120--Hb_001855_020 Hb_000482_120--Hb_000574_170 Hb_012395_250 Hb_012395_250 Hb_000327_320--Hb_012395_250 Hb_000087_190 Hb_000087_190 Hb_000327_320--Hb_000087_190 Hb_001369_190 Hb_001369_190 Hb_000327_320--Hb_001369_190 Hb_007101_070 Hb_007101_070 Hb_000327_320--Hb_007101_070 Hb_002388_070 Hb_002388_070 Hb_000327_320--Hb_002388_070 Hb_000333_030 Hb_000333_030 Hb_000574_170--Hb_000333_030 Hb_002217_360 Hb_002217_360 Hb_000574_170--Hb_002217_360 Hb_000959_130 Hb_000959_130 Hb_000574_170--Hb_000959_130 Hb_010222_040 Hb_010222_040 Hb_000574_170--Hb_010222_040 Hb_000395_310--Hb_002388_070 Hb_002874_200 Hb_002874_200 Hb_000395_310--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_000395_310--Hb_004032_290 Hb_000230_410 Hb_000230_410 Hb_000395_310--Hb_000230_410 Hb_003466_010 Hb_003466_010 Hb_000395_310--Hb_003466_010 Hb_010142_060 Hb_010142_060 Hb_000395_310--Hb_010142_060 Hb_000345_550 Hb_000345_550 Hb_005784_010--Hb_000345_550 Hb_001951_080 Hb_001951_080 Hb_005784_010--Hb_001951_080 Hb_007904_280 Hb_007904_280 Hb_005784_010--Hb_007904_280 Hb_004223_060 Hb_004223_060 Hb_005784_010--Hb_004223_060 Hb_001819_020 Hb_001819_020 Hb_005784_010--Hb_001819_020 Hb_009783_010 Hb_009783_010 Hb_005784_010--Hb_009783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.57794 3.17854 10.8382 0.453186 0.754622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.889615 4.35162

CAGE analysis