Hb_010344_020

Information

Type -
Description -
Location Contig10344: 32800-38823
Sequence    

Annotation

kegg
ID rcu:RCOM_1643590
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012078463.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
swissprot
ID Q9SAK0
description Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1
trembl
ID B9T1G4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1643590 PE=4 SV=1
Gene Ontology
ID GO:0009560
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01343: 32609-35480 , PASA_asmbl_01344: 35823-38971 , PASA_asmbl_01345: 36487-36842
cDNA
(Sanger)
(ID:Location)		 037_C03.ab1: 35823-37650

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010344_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
2 Hb_138585_030 0.0753677824 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
3 Hb_005147_080 0.084490401 - - PREDICTED: prolycopene isomerase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_011861_050 0.0934382352 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
5 Hb_002915_010 0.0935439921 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
6 Hb_000208_190 0.0941242986 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
7 Hb_000094_100 0.0965471487 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
8 Hb_001789_160 0.1005195634 - - PREDICTED: putative transporter arsB [Jatropha curcas]
9 Hb_000480_040 0.1005904738 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
10 Hb_000260_710 0.1027467889 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
11 Hb_189003_060 0.1032501509 - - PREDICTED: uroporphyrinogen decarboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000613_120 0.1044591275 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
13 Hb_068804_090 0.1053154911 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
14 Hb_004705_160 0.1053846424 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
15 Hb_000579_040 0.1063135828 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
16 Hb_004629_030 0.1066326495 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_002928_030 0.1088983229 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
18 Hb_001438_010 0.1105931314 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
19 Hb_005000_080 0.1113182209 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
20 Hb_022378_010 0.1121903544 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010344_020 Hb_010344_020 Hb_138585_030 Hb_138585_030 Hb_010344_020--Hb_138585_030 Hb_005147_080 Hb_005147_080 Hb_010344_020--Hb_005147_080 Hb_011861_050 Hb_011861_050 Hb_010344_020--Hb_011861_050 Hb_002915_010 Hb_002915_010 Hb_010344_020--Hb_002915_010 Hb_000208_190 Hb_000208_190 Hb_010344_020--Hb_000208_190 Hb_000094_100 Hb_000094_100 Hb_010344_020--Hb_000094_100 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_002290_030 Hb_002290_030 Hb_005147_080--Hb_002290_030 Hb_004375_050 Hb_004375_050 Hb_005147_080--Hb_004375_050 Hb_005147_080--Hb_011861_050 Hb_189003_060 Hb_189003_060 Hb_005147_080--Hb_189003_060 Hb_000318_130 Hb_000318_130 Hb_005147_080--Hb_000318_130 Hb_000480_040 Hb_000480_040 Hb_011861_050--Hb_000480_040 Hb_000144_060 Hb_000144_060 Hb_011861_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_011861_050--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_012779_080 Hb_012779_080 Hb_002915_010--Hb_012779_080 Hb_003883_010 Hb_003883_010 Hb_002915_010--Hb_003883_010 Hb_000320_190 Hb_000320_190 Hb_002915_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_002915_010--Hb_002107_050 Hb_002915_010--Hb_000094_100 Hb_000680_010 Hb_000680_010 Hb_002915_010--Hb_000680_010 Hb_000208_190--Hb_004705_160 Hb_022378_010 Hb_022378_010 Hb_000208_190--Hb_022378_010 Hb_005000_080 Hb_005000_080 Hb_000208_190--Hb_005000_080 Hb_000208_190--Hb_138585_030 Hb_000788_030 Hb_000788_030 Hb_000208_190--Hb_000788_030 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_000094_100--Hb_012779_080 Hb_005665_090 Hb_005665_090 Hb_000094_100--Hb_005665_090 Hb_000094_100--Hb_010620_050 Hb_000094_100--Hb_138585_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12209 6.16965 17.4629 7.99671 4.44132 4.09133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85726 3.63848 7.06955 4.87785 22.4356

CAGE analysis