Hb_010344_030

Information

Type -
Description -
Location Contig10344: 39664-42110
Sequence    

Annotation

kegg
ID rcu:RCOM_1643610
description hypothetical protein
nr
ID XP_002532085.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1G6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1643610 PE=4 SV=1
Gene Ontology
ID GO:0005623
description la-related protein 6 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01346: 39689-42081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010344_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006006_060 0.091205803 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
3 Hb_005250_010 0.0926404953 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
4 Hb_000200_350 0.0942131776 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
5 Hb_000388_150 0.0976533556 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
6 Hb_004735_020 0.0998638736 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
7 Hb_003462_060 0.1002178531 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
8 Hb_025477_050 0.1029770963 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_024184_010 0.1055820472 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
10 Hb_001009_260 0.1062066692 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
11 Hb_016760_010 0.1063504952 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001396_240 0.1063868741 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
13 Hb_130589_010 0.1066650277 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
14 Hb_001421_090 0.1070987643 - - hypothetical protein RCOM_1278080 [Ricinus communis]
15 Hb_000815_230 0.107469355 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000108_020 0.1090414909 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
17 Hb_003053_050 0.1121917336 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
18 Hb_013405_080 0.1140365611 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
19 Hb_001080_070 0.1170585135 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
20 Hb_001220_050 0.1178426092 - - DNA-damage-inducible protein f, putative [Ricinus communis]

Gene co-expression network

sample Hb_010344_030 Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_010344_030--Hb_006006_060 Hb_005250_010 Hb_005250_010 Hb_010344_030--Hb_005250_010 Hb_000200_350 Hb_000200_350 Hb_010344_030--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_010344_030--Hb_000388_150 Hb_004735_020 Hb_004735_020 Hb_010344_030--Hb_004735_020 Hb_003462_060 Hb_003462_060 Hb_010344_030--Hb_003462_060 Hb_006006_060--Hb_000200_350 Hb_022693_130 Hb_022693_130 Hb_006006_060--Hb_022693_130 Hb_006006_060--Hb_000388_150 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_013405_080 Hb_013405_080 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110 Hb_000934_110 Hb_000934_110 Hb_000200_350--Hb_000934_110 Hb_009020_040 Hb_009020_040 Hb_000200_350--Hb_009020_040 Hb_001157_230 Hb_001157_230 Hb_000200_350--Hb_001157_230 Hb_024184_010 Hb_024184_010 Hb_000200_350--Hb_024184_010 Hb_000480_040 Hb_000480_040 Hb_000388_150--Hb_000480_040 Hb_174865_040 Hb_174865_040 Hb_000388_150--Hb_174865_040 Hb_000388_150--Hb_022693_130 Hb_005062_060 Hb_005062_060 Hb_000388_150--Hb_005062_060 Hb_001009_260 Hb_001009_260 Hb_004735_020--Hb_001009_260 Hb_000120_860 Hb_000120_860 Hb_004735_020--Hb_000120_860 Hb_003682_070 Hb_003682_070 Hb_004735_020--Hb_003682_070 Hb_000629_070 Hb_000629_070 Hb_004735_020--Hb_000629_070 Hb_130589_010 Hb_130589_010 Hb_004735_020--Hb_130589_010 Hb_000482_050 Hb_000482_050 Hb_003462_060--Hb_000482_050 Hb_000260_710 Hb_000260_710 Hb_003462_060--Hb_000260_710 Hb_002600_070 Hb_002600_070 Hb_003462_060--Hb_002600_070 Hb_003462_060--Hb_022693_130 Hb_001396_240 Hb_001396_240 Hb_003462_060--Hb_001396_240 Hb_000529_130 Hb_000529_130 Hb_003462_060--Hb_000529_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8523 25.8805 48.9799 53.197 21.3702 43.6455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6257 12.4013 14.4227 24.3164 104.137

CAGE analysis