Hb_010344_040

Information

Type -
Description -
Location Contig10344: 43262-46768
Sequence    

Annotation

kegg
ID rcu:RCOM_0546020
description hypothetical protein
nr
ID XP_012075117.1
description PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10354 PE=4 SV=1
Gene Ontology
ID GO:0005634
description hydroxyproline-rich glyco protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01348: 43295-46815 , PASA_asmbl_01349: 43295-46754
cDNA
(Sanger)
(ID:Location)		 023_H08.ab1: 43628-46824 , 023_N18.ab1: 43595-46800 , 024_E07.ab1: 46520-46804 , 026_M05.ab1: 46539-46801

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010344_040 0.0 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
2 Hb_000333_090 0.0934058943 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
3 Hb_010172_030 0.1004179249 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
4 Hb_000567_170 0.1019067682 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
5 Hb_001912_010 0.1057708052 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
6 Hb_002214_050 0.1062048795 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
7 Hb_000922_270 0.1082201035 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
8 Hb_002447_030 0.1087923156 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
9 Hb_004994_260 0.1104381253 - - Remorin, putative [Ricinus communis]
10 Hb_001584_300 0.1104485116 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
11 Hb_000922_100 0.1106864578 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
12 Hb_002571_020 0.1113176998 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
13 Hb_000907_090 0.1133761172 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_003376_130 0.1158869959 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
15 Hb_000212_260 0.1162665136 - - acyl-carrier-protein [Triadica sebifera]
16 Hb_000329_330 0.1199988939 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
17 Hb_001538_100 0.1205599076 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
18 Hb_002781_020 0.121200449 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
19 Hb_003038_180 0.1222125143 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
20 Hb_000085_250 0.1226779463 - - sodium/hydrogen exchanger, putative [Ricinus communis]

Gene co-expression network

sample Hb_010344_040 Hb_010344_040 Hb_000333_090 Hb_000333_090 Hb_010344_040--Hb_000333_090 Hb_010172_030 Hb_010172_030 Hb_010344_040--Hb_010172_030 Hb_000567_170 Hb_000567_170 Hb_010344_040--Hb_000567_170 Hb_001912_010 Hb_001912_010 Hb_010344_040--Hb_001912_010 Hb_002214_050 Hb_002214_050 Hb_010344_040--Hb_002214_050 Hb_000922_270 Hb_000922_270 Hb_010344_040--Hb_000922_270 Hb_084849_020 Hb_084849_020 Hb_000333_090--Hb_084849_020 Hb_000333_090--Hb_010172_030 Hb_001369_050 Hb_001369_050 Hb_000333_090--Hb_001369_050 Hb_000362_210 Hb_000362_210 Hb_000333_090--Hb_000362_210 Hb_000333_090--Hb_002214_050 Hb_100777_010 Hb_100777_010 Hb_000333_090--Hb_100777_010 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_010172_030--Hb_000362_210 Hb_000567_170--Hb_000212_260 Hb_000069_100 Hb_000069_100 Hb_000567_170--Hb_000069_100 Hb_001616_060 Hb_001616_060 Hb_000567_170--Hb_001616_060 Hb_000028_400 Hb_000028_400 Hb_000567_170--Hb_000028_400 Hb_006831_030 Hb_006831_030 Hb_000567_170--Hb_006831_030 Hb_007021_020 Hb_007021_020 Hb_000567_170--Hb_007021_020 Hb_001912_010--Hb_000212_260 Hb_007479_020 Hb_007479_020 Hb_001912_010--Hb_007479_020 Hb_010172_070 Hb_010172_070 Hb_001912_010--Hb_010172_070 Hb_006573_220 Hb_006573_220 Hb_001912_010--Hb_006573_220 Hb_000329_330 Hb_000329_330 Hb_001912_010--Hb_000329_330 Hb_003376_030 Hb_003376_030 Hb_001912_010--Hb_003376_030 Hb_001437_220 Hb_001437_220 Hb_002214_050--Hb_001437_220 Hb_004994_260 Hb_004994_260 Hb_002214_050--Hb_004994_260 Hb_002214_050--Hb_000362_210 Hb_000907_090 Hb_000907_090 Hb_002214_050--Hb_000907_090 Hb_003408_020 Hb_003408_020 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_000922_270--Hb_010172_070 Hb_001711_030 Hb_001711_030 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.4774 14.1195 7.87816 24.7936 49.9029 52.995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
190.986 130.474 88.5153 20.2909 9.10386

CAGE analysis