Hb_010361_010

Information

Type -
Description -
Location Contig10361: 14203-24572
Sequence    

Annotation

kegg
ID pxb:103931830
description ras-related protein RABH1b
nr
ID XP_012083760.1
description PREDICTED: ras-related protein RABH1b [Jatropha curcas]
swissprot
ID O80501
description Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1
trembl
ID A0A067KAR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14680 PE=3 SV=1
Gene Ontology
ID GO:0005768
description ras-related protein rabh1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01373: 14222-24713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010361_010 0.0 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
2 Hb_000329_200 0.0581709135 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
3 Hb_000566_120 0.0661558358 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
4 Hb_024650_070 0.0666408579 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
5 Hb_000599_250 0.0676980887 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
6 Hb_004934_100 0.0690941546 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000045_310 0.0701922451 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
8 Hb_000827_050 0.0716294688 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_000317_390 0.0720510364 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
10 Hb_026889_030 0.0721968343 - - protein with unknown function [Ricinus communis]
11 Hb_017225_020 0.0737799685 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
12 Hb_028872_080 0.0768370254 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
13 Hb_002408_020 0.0787379547 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
14 Hb_002871_190 0.0793667539 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
15 Hb_004109_170 0.0794192438 - - PREDICTED: probable ribokinase [Jatropha curcas]
16 Hb_004889_010 0.0804600988 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
17 Hb_118419_010 0.0807020302 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
18 Hb_002343_060 0.0812631687 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
19 Hb_001711_020 0.081746675 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
20 Hb_000985_030 0.0819738968 - - PREDICTED: RRP15-like protein [Populus euphratica]

Gene co-expression network

sample Hb_010361_010 Hb_010361_010 Hb_000329_200 Hb_000329_200 Hb_010361_010--Hb_000329_200 Hb_000566_120 Hb_000566_120 Hb_010361_010--Hb_000566_120 Hb_024650_070 Hb_024650_070 Hb_010361_010--Hb_024650_070 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_000045_310 Hb_000045_310 Hb_010361_010--Hb_000045_310 Hb_000329_200--Hb_024650_070 Hb_001662_150 Hb_001662_150 Hb_000329_200--Hb_001662_150 Hb_001604_060 Hb_001604_060 Hb_000329_200--Hb_001604_060 Hb_017225_020 Hb_017225_020 Hb_000329_200--Hb_017225_020 Hb_000656_240 Hb_000656_240 Hb_000329_200--Hb_000656_240 Hb_000566_120--Hb_000045_310 Hb_006573_190 Hb_006573_190 Hb_000566_120--Hb_006573_190 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_024650_070--Hb_000045_310 Hb_005551_040 Hb_005551_040 Hb_024650_070--Hb_005551_040 Hb_024650_070--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_024650_070--Hb_028396_010 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000375_350 Hb_000375_350 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_003697_040 Hb_003697_040 Hb_004934_100--Hb_003697_040 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_000045_310--Hb_028396_010 Hb_000045_310--Hb_006573_190 Hb_008071_020 Hb_008071_020 Hb_000045_310--Hb_008071_020 Hb_000045_310--Hb_001931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.9371 10.143 35.1583 34.4873 29.4672 31.9431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.9624 61.1682 46.3917 26.1351 34.146

CAGE analysis