Hb_010362_020

Information

Type transcription factor
Description TF Family: LOB
Location Contig10362: 12223-13104
Sequence    

Annotation

kegg
ID rcu:RCOM_1587630
description hypothetical protein
nr
ID XP_012068238.1
description PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
swissprot
ID Q9SN23
description LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1
trembl
ID A0A067LAV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16042 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01374: 12275-13235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010362_020 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
2 Hb_000025_290 0.1352680472 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
3 Hb_001198_030 0.1360098562 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
4 Hb_001104_120 0.1431414871 - - -
5 Hb_000326_010 0.1458989312 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
6 Hb_002293_030 0.1482047635 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
7 Hb_005276_100 0.1501743557 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
8 Hb_000163_200 0.1503484806 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
9 Hb_001252_140 0.1539373804 - - catalytic, putative [Ricinus communis]
10 Hb_011689_050 0.1549149742 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
11 Hb_001621_180 0.1549543022 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
12 Hb_000563_590 0.1551846129 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
13 Hb_001035_030 0.1552397174 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
14 Hb_007441_180 0.1561365568 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000853_360 0.1570187945 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
16 Hb_000085_200 0.1594388285 - - ATP synthase subunit H protein [Hevea brasiliensis]
17 Hb_000617_050 0.1610699115 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
18 Hb_000161_050 0.1617878698 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001123_120 0.162618996 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
20 Hb_000061_160 0.162912676 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010362_020 Hb_010362_020 Hb_000025_290 Hb_000025_290 Hb_010362_020--Hb_000025_290 Hb_001198_030 Hb_001198_030 Hb_010362_020--Hb_001198_030 Hb_001104_120 Hb_001104_120 Hb_010362_020--Hb_001104_120 Hb_000326_010 Hb_000326_010 Hb_010362_020--Hb_000326_010 Hb_002293_030 Hb_002293_030 Hb_010362_020--Hb_002293_030 Hb_005276_100 Hb_005276_100 Hb_010362_020--Hb_005276_100 Hb_012779_110 Hb_012779_110 Hb_000025_290--Hb_012779_110 Hb_000025_290--Hb_001104_120 Hb_007441_180 Hb_007441_180 Hb_000025_290--Hb_007441_180 Hb_001621_180 Hb_001621_180 Hb_000025_290--Hb_001621_180 Hb_000085_200 Hb_000085_200 Hb_000025_290--Hb_000085_200 Hb_011609_180 Hb_011609_180 Hb_000025_290--Hb_011609_180 Hb_001349_010 Hb_001349_010 Hb_001198_030--Hb_001349_010 Hb_004297_040 Hb_004297_040 Hb_001198_030--Hb_004297_040 Hb_001266_050 Hb_001266_050 Hb_001198_030--Hb_001266_050 Hb_010166_020 Hb_010166_020 Hb_001198_030--Hb_010166_020 Hb_000143_050 Hb_000143_050 Hb_001198_030--Hb_000143_050 Hb_001198_030--Hb_001621_180 Hb_000563_590 Hb_000563_590 Hb_001104_120--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_001104_120--Hb_007441_180 Hb_001804_040 Hb_001804_040 Hb_001104_120--Hb_001804_040 Hb_001104_120--Hb_001621_180 Hb_001454_330 Hb_001454_330 Hb_001104_120--Hb_001454_330 Hb_001442_020 Hb_001442_020 Hb_000326_010--Hb_001442_020 Hb_000190_060 Hb_000190_060 Hb_000326_010--Hb_000190_060 Hb_000417_110 Hb_000417_110 Hb_000326_010--Hb_000417_110 Hb_000061_480 Hb_000061_480 Hb_000326_010--Hb_000061_480 Hb_000318_380 Hb_000318_380 Hb_000326_010--Hb_000318_380 Hb_001951_110 Hb_001951_110 Hb_000326_010--Hb_001951_110 Hb_011310_060 Hb_011310_060 Hb_002293_030--Hb_011310_060 Hb_017711_010 Hb_017711_010 Hb_002293_030--Hb_017711_010 Hb_008847_020 Hb_008847_020 Hb_002293_030--Hb_008847_020 Hb_002234_210 Hb_002234_210 Hb_002293_030--Hb_002234_210 Hb_000526_150 Hb_000526_150 Hb_002293_030--Hb_000526_150 Hb_000634_050 Hb_000634_050 Hb_002293_030--Hb_000634_050 Hb_005276_100--Hb_000143_050 Hb_000580_160 Hb_000580_160 Hb_005276_100--Hb_000580_160 Hb_000032_260 Hb_000032_260 Hb_005276_100--Hb_000032_260 Hb_005276_100--Hb_000061_160 Hb_005276_100--Hb_001621_180 Hb_000853_360 Hb_000853_360 Hb_005276_100--Hb_000853_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.2832 5.66093 0.887871 10.9364 56.3258 23.9698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.6275 114.384 31.5417 18.2936 0.872204

CAGE analysis