Hb_010362_030

Information

Type -
Description -
Location Contig10362: 16046-23355
Sequence    

Annotation

kegg
ID rcu:RCOM_1587640
description hypothetical protein
nr
ID XP_012068239.1
description PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
swissprot
ID Q94AI1
description QWRF motif-containing protein 2 OS=Arabidopsis thaliana GN=QWRF2 PE=2 SV=1
trembl
ID A0A067KZK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16043 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01377: 16287-22406 , PASA_asmbl_01378: 23130-23281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010362_030 0.0 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
2 Hb_001405_190 0.0649135387 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
3 Hb_010998_040 0.067693901 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
4 Hb_143766_110 0.0702696914 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
5 Hb_000567_190 0.0770123108 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
6 Hb_001140_030 0.0776107103 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
7 Hb_000139_190 0.0799051694 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
8 Hb_003292_050 0.0810034281 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
9 Hb_039605_010 0.0834653099 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
10 Hb_000525_100 0.0837690993 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
11 Hb_002054_050 0.0857060286 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
12 Hb_000042_340 0.0861829656 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
13 Hb_000130_420 0.0891014403 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
14 Hb_002615_120 0.0898679511 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
15 Hb_001804_110 0.0904091163 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
16 Hb_014361_150 0.0909728889 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
17 Hb_000959_230 0.0915853986 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
18 Hb_004631_190 0.0917609245 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
19 Hb_000718_070 0.0939812645 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000028_510 0.0944791057 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]

Gene co-expression network

sample Hb_010362_030 Hb_010362_030 Hb_001405_190 Hb_001405_190 Hb_010362_030--Hb_001405_190 Hb_010998_040 Hb_010998_040 Hb_010362_030--Hb_010998_040 Hb_143766_110 Hb_143766_110 Hb_010362_030--Hb_143766_110 Hb_000567_190 Hb_000567_190 Hb_010362_030--Hb_000567_190 Hb_001140_030 Hb_001140_030 Hb_010362_030--Hb_001140_030 Hb_000139_190 Hb_000139_190 Hb_010362_030--Hb_000139_190 Hb_002615_120 Hb_002615_120 Hb_001405_190--Hb_002615_120 Hb_001405_190--Hb_143766_110 Hb_007929_080 Hb_007929_080 Hb_001405_190--Hb_007929_080 Hb_004631_190 Hb_004631_190 Hb_001405_190--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_001405_190--Hb_000922_020 Hb_001804_110 Hb_001804_110 Hb_010998_040--Hb_001804_110 Hb_010998_040--Hb_001140_030 Hb_000959_230 Hb_000959_230 Hb_010998_040--Hb_000959_230 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_000162_030 Hb_000162_030 Hb_143766_110--Hb_000162_030 Hb_000260_440 Hb_000260_440 Hb_143766_110--Hb_000260_440 Hb_000264_070 Hb_000264_070 Hb_143766_110--Hb_000264_070 Hb_143766_110--Hb_007929_080 Hb_000879_180 Hb_000879_180 Hb_000567_190--Hb_000879_180 Hb_001635_040 Hb_001635_040 Hb_000567_190--Hb_001635_040 Hb_000635_040 Hb_000635_040 Hb_000567_190--Hb_000635_040 Hb_000567_190--Hb_000130_420 Hb_001761_120 Hb_001761_120 Hb_000567_190--Hb_001761_120 Hb_001952_120 Hb_001952_120 Hb_001140_030--Hb_001952_120 Hb_032264_060 Hb_032264_060 Hb_001140_030--Hb_032264_060 Hb_001140_030--Hb_004631_190 Hb_005965_030 Hb_005965_030 Hb_001140_030--Hb_005965_030 Hb_001140_030--Hb_001405_190 Hb_027073_030 Hb_027073_030 Hb_000139_190--Hb_027073_030 Hb_039605_010 Hb_039605_010 Hb_000139_190--Hb_039605_010 Hb_000139_190--Hb_032264_060 Hb_000287_050 Hb_000287_050 Hb_000139_190--Hb_000287_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.98393 8.98118 11.7717 5.88082 8.62951 7.58342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09104 3.70831 5.27483 3.03399 5.20324

CAGE analysis