Hb_010367_020

Information

Type -
Description -
Location Contig10367: 13043-13255
Sequence    

Annotation

kegg
ID pop:POPTR_0009s054801
description hypothetical protein
nr
ID XP_006379060.1
description hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G5Z3
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s054801g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010367_020 0.0 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
2 Hb_009803_010 0.18496503 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
3 Hb_002016_030 0.1923490747 - - conserved hypothetical protein [Ricinus communis]
4 Hb_122741_010 0.1996685765 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
5 Hb_009119_010 0.2008497122 - - -
6 Hb_000025_080 0.2271517481 - - -
7 Hb_158296_010 0.2292599207 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
8 Hb_179286_010 0.2352356347 - - STRUWWELPETER family protein [Populus trichocarpa]
9 Hb_001916_010 0.242725802 - - hypothetical protein VITISV_021527 [Vitis vinifera]
10 Hb_000025_220 0.2437321257 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
11 Hb_162090_010 0.2442560032 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
12 Hb_022614_010 0.2466221755 - - -
13 Hb_006794_010 0.2492780603 - - elicitor-responsive protein [Hevea brasiliensis]
14 Hb_000953_120 0.2505280985 - - -
15 Hb_005368_030 0.2515387045 - - -
16 Hb_017014_020 0.2532090112 - - -
17 Hb_005263_010 0.2573143055 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
18 Hb_106596_010 0.2578009004 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006162_020 0.2583967784 - - -
20 Hb_182507_010 0.2601852668 - - -

Gene co-expression network

sample Hb_010367_020 Hb_010367_020 Hb_009803_010 Hb_009803_010 Hb_010367_020--Hb_009803_010 Hb_002016_030 Hb_002016_030 Hb_010367_020--Hb_002016_030 Hb_122741_010 Hb_122741_010 Hb_010367_020--Hb_122741_010 Hb_009119_010 Hb_009119_010 Hb_010367_020--Hb_009119_010 Hb_000025_080 Hb_000025_080 Hb_010367_020--Hb_000025_080 Hb_158296_010 Hb_158296_010 Hb_010367_020--Hb_158296_010 Hb_000025_220 Hb_000025_220 Hb_009803_010--Hb_000025_220 Hb_009803_010--Hb_122741_010 Hb_005263_010 Hb_005263_010 Hb_009803_010--Hb_005263_010 Hb_005368_030 Hb_005368_030 Hb_009803_010--Hb_005368_030 Hb_182507_010 Hb_182507_010 Hb_009803_010--Hb_182507_010 Hb_000953_120 Hb_000953_120 Hb_002016_030--Hb_000953_120 Hb_002016_030--Hb_009119_010 Hb_041601_010 Hb_041601_010 Hb_002016_030--Hb_041601_010 Hb_002016_030--Hb_000025_080 Hb_011200_010 Hb_011200_010 Hb_002016_030--Hb_011200_010 Hb_001916_010 Hb_001916_010 Hb_122741_010--Hb_001916_010 Hb_004907_040 Hb_004907_040 Hb_122741_010--Hb_004907_040 Hb_000134_100 Hb_000134_100 Hb_122741_010--Hb_000134_100 Hb_122741_010--Hb_158296_010 Hb_002972_060 Hb_002972_060 Hb_009119_010--Hb_002972_060 Hb_009119_010--Hb_000953_120 Hb_009119_010--Hb_000025_080 Hb_000270_540 Hb_000270_540 Hb_009119_010--Hb_000270_540 Hb_013040_010 Hb_013040_010 Hb_009119_010--Hb_013040_010 Hb_000025_080--Hb_000953_120 Hb_162090_010 Hb_162090_010 Hb_000025_080--Hb_162090_010 Hb_017014_020 Hb_017014_020 Hb_000025_080--Hb_017014_020 Hb_006794_010 Hb_006794_010 Hb_000025_080--Hb_006794_010 Hb_000562_010 Hb_000562_010 Hb_158296_010--Hb_000562_010 Hb_133648_010 Hb_133648_010 Hb_158296_010--Hb_133648_010 Hb_007416_080 Hb_007416_080 Hb_158296_010--Hb_007416_080 Hb_001208_020 Hb_001208_020 Hb_158296_010--Hb_001208_020 Hb_000164_130 Hb_000164_130 Hb_158296_010--Hb_000164_130 Hb_000244_140 Hb_000244_140 Hb_158296_010--Hb_000244_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72953 0 6.24089 64.1067 0 28.1486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11407 3.58254 0 0 0

CAGE analysis