Hb_010368_070

Information

Type -
Description -
Location Contig10368: 47570-50447
Sequence    

Annotation

kegg
ID rcu:RCOM_1442480
description hypothetical protein
nr
ID XP_002512752.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGP3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442480 PE=4 SV=1
Gene Ontology
ID GO:0016301
description snf1-related kinase interactor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01391: 47569-50253 , PASA_asmbl_01392: 48197-49552 , PASA_asmbl_01393: 47899-50481
cDNA
(Sanger)
(ID:Location)		 017_C23.ab1: 47569-47804 , 018_P19.ab1: 48151-50148 , 025_O02.ab1: 47717-49885 , 035_C04.ab1: 48151-50148

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010368_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000525_040 0.1049513078 - - -
3 Hb_002903_120 0.1163942351 - - -
4 Hb_004032_460 0.1182928067 - - -
5 Hb_001628_110 0.1206630034 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
6 Hb_002172_030 0.1217279725 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
7 Hb_000050_120 0.1227841185 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
8 Hb_005057_010 0.1234633079 - - -
9 Hb_003304_080 0.1254307749 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
10 Hb_130177_010 0.1278993097 - - hypothetical protein RCOM_0897890 [Ricinus communis]
11 Hb_000300_540 0.1284279469 - - PREDICTED: syntaxin-132 [Jatropha curcas]
12 Hb_000173_370 0.1304758269 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
13 Hb_000188_190 0.1379402305 - - -
14 Hb_043959_010 0.142484362 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
15 Hb_000173_210 0.1432754148 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
16 Hb_012654_020 0.1436711978 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002078_040 0.144048076 - - protein with unknown function [Ricinus communis]
18 Hb_000926_270 0.1451349856 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
19 Hb_001635_220 0.1457176746 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
20 Hb_000317_080 0.1474483655 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]

Gene co-expression network

sample Hb_010368_070 Hb_010368_070 Hb_000525_040 Hb_000525_040 Hb_010368_070--Hb_000525_040 Hb_002903_120 Hb_002903_120 Hb_010368_070--Hb_002903_120 Hb_004032_460 Hb_004032_460 Hb_010368_070--Hb_004032_460 Hb_001628_110 Hb_001628_110 Hb_010368_070--Hb_001628_110 Hb_002172_030 Hb_002172_030 Hb_010368_070--Hb_002172_030 Hb_000050_120 Hb_000050_120 Hb_010368_070--Hb_000050_120 Hb_000525_040--Hb_002903_120 Hb_000525_040--Hb_004032_460 Hb_019936_010 Hb_019936_010 Hb_000525_040--Hb_019936_010 Hb_007634_020 Hb_007634_020 Hb_000525_040--Hb_007634_020 Hb_011616_030 Hb_011616_030 Hb_000525_040--Hb_011616_030 Hb_000173_210 Hb_000173_210 Hb_002903_120--Hb_000173_210 Hb_002897_040 Hb_002897_040 Hb_002903_120--Hb_002897_040 Hb_045502_010 Hb_045502_010 Hb_002903_120--Hb_045502_010 Hb_000544_120 Hb_000544_120 Hb_002903_120--Hb_000544_120 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_000173_370 Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340 Hb_002078_040 Hb_002078_040 Hb_001628_110--Hb_002078_040 Hb_001628_110--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_001628_110--Hb_154381_050 Hb_005410_010 Hb_005410_010 Hb_001628_110--Hb_005410_010 Hb_043637_010 Hb_043637_010 Hb_001628_110--Hb_043637_010 Hb_003507_020 Hb_003507_020 Hb_001628_110--Hb_003507_020 Hb_012654_020 Hb_012654_020 Hb_002172_030--Hb_012654_020 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_002172_030--Hb_005410_010 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_002172_030--Hb_154381_050 Hb_000050_120--Hb_002078_040 Hb_003304_080 Hb_003304_080 Hb_000050_120--Hb_003304_080 Hb_000050_120--Hb_000365_350 Hb_000050_120--Hb_012654_020 Hb_007810_040 Hb_007810_040 Hb_000050_120--Hb_007810_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
892.649 69.176 60.8966 16.1375 1166.82 480.655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
255.593 227.234 206.02 35.4517 15.9988

CAGE analysis