Hb_010381_060

Information

Type -
Description -
Location Contig10381: 46657-56573
Sequence    

Annotation

kegg
ID tcc:TCM_029008
description DEA(D/H)-box RNA helicase family protein
nr
ID KHG24204.1
description DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
swissprot
ID Q5QMN3
description DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2
trembl
ID A0A0B0PIE4
description DEAD-box ATP-dependent RNA helicase 20-like protein OS=Gossypium arboreum GN=F383_00152 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01421: 46717-56541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_060 0.0 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
2 Hb_003464_020 0.0457997423 - - srpk, putative [Ricinus communis]
3 Hb_000714_050 0.0531835182 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
4 Hb_000029_130 0.0545219069 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
5 Hb_000023_190 0.0612743493 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
6 Hb_009627_010 0.0614591979 - - Protein dom-3, putative [Ricinus communis]
7 Hb_001599_030 0.0617886968 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
8 Hb_000743_040 0.0623766607 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
9 Hb_001235_200 0.0629785565 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000567_050 0.0635362879 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
11 Hb_003952_150 0.0643549097 - - PREDICTED: cactin [Jatropha curcas]
12 Hb_000320_200 0.0670454117 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
13 Hb_006449_050 0.067634408 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
14 Hb_016898_010 0.0696140552 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
15 Hb_000329_090 0.07007991 - - arginase, putative [Ricinus communis]
16 Hb_000025_110 0.071041664 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
17 Hb_001488_410 0.0715460722 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
18 Hb_000035_040 0.0718248558 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
19 Hb_002304_090 0.0720105144 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
20 Hb_004096_100 0.0720342034 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010381_060 Hb_010381_060 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_003464_020--Hb_000023_190 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_001488_410 Hb_001488_410 Hb_003464_020--Hb_001488_410 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_001235_200 Hb_001235_200 Hb_000714_050--Hb_001235_200 Hb_000320_200 Hb_000320_200 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130 Hb_000207_310 Hb_000207_310 Hb_000029_130--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000029_130--Hb_000913_050 Hb_000029_130--Hb_003464_020 Hb_002890_020 Hb_002890_020 Hb_000029_130--Hb_002890_020 Hb_000029_130--Hb_009627_010 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_000023_190--Hb_001488_410 Hb_000023_190--Hb_021409_170 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_002304_090 Hb_002304_090 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_001599_030--Hb_001235_200 Hb_001599_030--Hb_000320_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.3684 27.4236 23.5342 20.6484 58.918 63.9021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4745 20.7904 24.734 33.4642 27.1817

CAGE analysis