Hb_010381_070

Information

Type -
Description -
Location Contig10381: 58879-63512
Sequence    

Annotation

kegg
ID rcu:RCOM_0312590
description hypothetical protein
nr
ID XP_012068997.1
description PREDICTED: protein STU1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24786 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein stu1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01423: 58904-63446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_070 0.0 - - PREDICTED: protein STU1-like [Jatropha curcas]
2 Hb_000139_410 0.0467927262 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
3 Hb_002375_020 0.0647731031 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
4 Hb_004109_200 0.0670910819 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
5 Hb_001623_420 0.0672762966 - - nucleotide binding protein, putative [Ricinus communis]
6 Hb_000754_060 0.0693230824 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
7 Hb_001584_330 0.070738956 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
8 Hb_001377_290 0.0772812721 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
9 Hb_168707_030 0.0791149067 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
10 Hb_005306_110 0.0803479105 - - casein kinase, putative [Ricinus communis]
11 Hb_001301_160 0.0816461735 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
12 Hb_021254_030 0.0825674564 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
13 Hb_001511_020 0.0829376877 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
14 Hb_000190_140 0.0836222589 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
15 Hb_001913_010 0.0860281915 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
16 Hb_002150_080 0.0860457932 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
17 Hb_000123_120 0.0862438666 - - actin depolymerizing factor 4 [Hevea brasiliensis]
18 Hb_000120_950 0.0876158594 - - PREDICTED: protein GRIP [Jatropha curcas]
19 Hb_002685_140 0.0888195661 - - PREDICTED: membrin-11 [Jatropha curcas]
20 Hb_000000_080 0.0889937792 - - lipoate-protein ligase B, putative [Ricinus communis]

Gene co-expression network

sample Hb_010381_070 Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_010381_070--Hb_000139_410 Hb_002375_020 Hb_002375_020 Hb_010381_070--Hb_002375_020 Hb_004109_200 Hb_004109_200 Hb_010381_070--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_010381_070--Hb_001623_420 Hb_000754_060 Hb_000754_060 Hb_010381_070--Hb_000754_060 Hb_001584_330 Hb_001584_330 Hb_010381_070--Hb_001584_330 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_000139_410--Hb_001584_330 Hb_000139_410--Hb_004109_200 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080 Hb_000923_020 Hb_000923_020 Hb_002375_020--Hb_000923_020 Hb_001301_160 Hb_001301_160 Hb_002375_020--Hb_001301_160 Hb_002027_260 Hb_002027_260 Hb_002375_020--Hb_002027_260 Hb_002375_020--Hb_004109_200 Hb_006332_020 Hb_006332_020 Hb_002375_020--Hb_006332_020 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_000483_350 Hb_000483_350 Hb_004109_200--Hb_000483_350 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_001623_420--Hb_001584_330 Hb_000120_950 Hb_000120_950 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_000190_140 Hb_000190_140 Hb_000754_060--Hb_000190_140 Hb_000754_060--Hb_000120_950 Hb_002477_160 Hb_002477_160 Hb_000754_060--Hb_002477_160 Hb_007951_050 Hb_007951_050 Hb_000754_060--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000754_060--Hb_000554_020 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_006400_040 Hb_006400_040 Hb_001584_330--Hb_006400_040 Hb_001584_330--Hb_000120_950
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.0325 27.6732 16.6088 18.7433 39.3646 46.9226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.1992 46.1379 52.6471 17.7003 5.65748

CAGE analysis