Hb_010381_080

Information

Type -
Description -
Location Contig10381: 65497-71195
Sequence    

Annotation

kegg
ID rcu:RCOM_0312700
description cytochrome P450, putative (EC:1.14.13.79)
nr
ID XP_002527414.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q94IA6
description 3-epi-6-deoxocathasterone 23-monooxygenase OS=Arabidopsis thaliana GN=CYP90D1 PE=2 SV=1
trembl
ID B9SN45
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0312700 PE=3 SV=1
Gene Ontology
ID GO:0005506
description 3-epi-6-deoxocathasterone 23-monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01424: 65388-65818 , PASA_asmbl_01425: 65820-71319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010381_080 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_004242_200 0.056719199 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
3 Hb_043935_010 0.0746054627 - - Receptor protein kinase-like protein [Medicago truncatula]
4 Hb_114893_010 0.0779285434 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
5 Hb_006147_020 0.0865234006 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001300_240 0.0870627486 - - shikimate dehydrogenase, putative [Ricinus communis]
7 Hb_004459_050 0.0984938121 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000199_090 0.1001352168 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
9 Hb_012539_080 0.1001809587 - - Polyprotein, putative [Solanum demissum]
10 Hb_004392_030 0.1037057516 - - oxidoreductase family protein [Populus trichocarpa]
11 Hb_015817_010 0.1058472254 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
12 Hb_000026_060 0.1122193578 - - beta-1,3-glucanase [Manihot esculenta]
13 Hb_080791_010 0.1133875213 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
14 Hb_002659_050 0.1150055883 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
15 Hb_000907_130 0.1153412219 - - -
16 Hb_003171_040 0.1187878313 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_002835_050 0.120430118 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
18 Hb_004896_030 0.1211125271 - - hypothetical protein VITISV_007475 [Vitis vinifera]
19 Hb_002122_070 0.1233098903 - - unnamed protein product [Vitis vinifera]
20 Hb_004146_030 0.1235686786 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010381_080 Hb_010381_080 Hb_004242_200 Hb_004242_200 Hb_010381_080--Hb_004242_200 Hb_043935_010 Hb_043935_010 Hb_010381_080--Hb_043935_010 Hb_114893_010 Hb_114893_010 Hb_010381_080--Hb_114893_010 Hb_006147_020 Hb_006147_020 Hb_010381_080--Hb_006147_020 Hb_001300_240 Hb_001300_240 Hb_010381_080--Hb_001300_240 Hb_004459_050 Hb_004459_050 Hb_010381_080--Hb_004459_050 Hb_004242_200--Hb_001300_240 Hb_004242_200--Hb_114893_010 Hb_004242_200--Hb_006147_020 Hb_004242_200--Hb_043935_010 Hb_004146_030 Hb_004146_030 Hb_004242_200--Hb_004146_030 Hb_015817_010 Hb_015817_010 Hb_043935_010--Hb_015817_010 Hb_004392_030 Hb_004392_030 Hb_043935_010--Hb_004392_030 Hb_043935_010--Hb_006147_020 Hb_012539_080 Hb_012539_080 Hb_043935_010--Hb_012539_080 Hb_002659_050 Hb_002659_050 Hb_043935_010--Hb_002659_050 Hb_114893_010--Hb_001300_240 Hb_002122_070 Hb_002122_070 Hb_114893_010--Hb_002122_070 Hb_039435_020 Hb_039435_020 Hb_114893_010--Hb_039435_020 Hb_000199_090 Hb_000199_090 Hb_114893_010--Hb_000199_090 Hb_006147_020--Hb_004392_030 Hb_006147_020--Hb_012539_080 Hb_006147_020--Hb_015817_010 Hb_080791_010 Hb_080791_010 Hb_006147_020--Hb_080791_010 Hb_001300_240--Hb_039435_020 Hb_001300_240--Hb_002122_070 Hb_001300_240--Hb_006147_020 Hb_006133_010 Hb_006133_010 Hb_004459_050--Hb_006133_010 Hb_004459_050--Hb_002659_050 Hb_004459_050--Hb_043935_010 Hb_015807_020 Hb_015807_020 Hb_004459_050--Hb_015807_020 Hb_004459_050--Hb_080791_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.079394 1.89226 1.08768 0.0123171 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0220181 0 0.921679 6.70447

CAGE analysis