Hb_010399_020

Information

Type -
Description -
Location Contig10399: 31510-37920
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010399_020 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_008151_030 0.0039044288 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_034667_010 0.0104066911 - - -
4 Hb_000260_190 0.0145661968 - - -
5 Hb_002400_450 0.0170084444 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
6 Hb_003400_030 0.0217349663 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
7 Hb_000944_010 0.0218332347 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_013205_010 0.0323904315 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
9 Hb_008473_010 0.0325097304 - - PREDICTED: laccase-14-like [Jatropha curcas]
10 Hb_091369_010 0.033492593 - - -
11 Hb_002673_050 0.0355225022 - - -
12 Hb_108404_010 0.0839409532 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_128287_010 0.1026445552 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_027394_010 0.1094106937 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
15 Hb_068347_020 0.1094319047 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_009066_010 0.1145065538 - - -
17 Hb_021068_020 0.1352473777 - - -
18 Hb_000204_180 0.1437720453 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
19 Hb_136856_010 0.1530925854 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
20 Hb_000227_110 0.1713278893 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_010399_020 Hb_010399_020 Hb_008151_030 Hb_008151_030 Hb_010399_020--Hb_008151_030 Hb_034667_010 Hb_034667_010 Hb_010399_020--Hb_034667_010 Hb_000260_190 Hb_000260_190 Hb_010399_020--Hb_000260_190 Hb_002400_450 Hb_002400_450 Hb_010399_020--Hb_002400_450 Hb_003400_030 Hb_003400_030 Hb_010399_020--Hb_003400_030 Hb_000944_010 Hb_000944_010 Hb_010399_020--Hb_000944_010 Hb_008151_030--Hb_034667_010 Hb_008151_030--Hb_000260_190 Hb_008151_030--Hb_002400_450 Hb_008151_030--Hb_003400_030 Hb_008151_030--Hb_000944_010 Hb_034667_010--Hb_000260_190 Hb_034667_010--Hb_002400_450 Hb_034667_010--Hb_003400_030 Hb_034667_010--Hb_000944_010 Hb_000260_190--Hb_002400_450 Hb_000260_190--Hb_003400_030 Hb_000260_190--Hb_000944_010 Hb_002400_450--Hb_003400_030 Hb_002400_450--Hb_000944_010 Hb_008473_010 Hb_008473_010 Hb_002400_450--Hb_008473_010 Hb_003400_030--Hb_000944_010 Hb_003400_030--Hb_008473_010 Hb_091369_010 Hb_091369_010 Hb_003400_030--Hb_091369_010 Hb_000944_010--Hb_008473_010 Hb_000944_010--Hb_091369_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0102962 0.010698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis