Hb_010407_040

Information

Type -
Description -
Location Contig10407: 46275-48709
Sequence    

Annotation

kegg
ID dosa:Os08t0444100-01
description Os08g0444100; Similar to Splicing factor 3b, subunit 5 (Splicing factor 3B subunit 10).
nr
ID XP_010262363.1
description PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
swissprot
ID P58728
description Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1
trembl
ID A0A0E0AT73
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01499: 46298-48674
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_040 0.0 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
2 Hb_000494_020 0.0530873522 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
3 Hb_000163_160 0.0563824362 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
4 Hb_145880_030 0.0584669874 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
5 Hb_003363_110 0.0674776372 - - protein with unknown function [Ricinus communis]
6 Hb_007778_030 0.0684497408 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_000000_160 0.0721562589 - - PREDICTED: membrin-11 [Jatropha curcas]
8 Hb_002105_090 0.072583251 - - Rab4 [Hevea brasiliensis]
9 Hb_165132_010 0.0746909211 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
10 Hb_011381_060 0.075167039 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
11 Hb_001936_080 0.0784507126 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
12 Hb_001279_310 0.0817844176 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
13 Hb_002518_050 0.0822258424 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
14 Hb_181288_010 0.0829941827 - - rac-GTP binding protein, putative [Ricinus communis]
15 Hb_000251_070 0.0835111706 - - hypothetical protein L484_010641 [Morus notabilis]
16 Hb_002811_260 0.0838395921 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
17 Hb_023226_040 0.0847713363 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
18 Hb_001662_070 0.0854256941 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
19 Hb_001269_680 0.085492154 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
20 Hb_004204_120 0.0860235411 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_010407_040 Hb_010407_040 Hb_000494_020 Hb_000494_020 Hb_010407_040--Hb_000494_020 Hb_000163_160 Hb_000163_160 Hb_010407_040--Hb_000163_160 Hb_145880_030 Hb_145880_030 Hb_010407_040--Hb_145880_030 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_007778_030 Hb_007778_030 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_002105_090 Hb_002105_090 Hb_000494_020--Hb_002105_090 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_001369_660 Hb_001369_660 Hb_000163_160--Hb_001369_660 Hb_004800_230 Hb_004800_230 Hb_000163_160--Hb_004800_230 Hb_000163_160--Hb_002105_090 Hb_000163_160--Hb_000000_160 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_001662_070 Hb_001662_070 Hb_145880_030--Hb_001662_070 Hb_165132_010 Hb_165132_010 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_028841_030 Hb_028841_030 Hb_003363_110--Hb_028841_030 Hb_002233_150 Hb_002233_150 Hb_003363_110--Hb_002233_150 Hb_005186_050 Hb_005186_050 Hb_003363_110--Hb_005186_050 Hb_003363_110--Hb_145880_030 Hb_001269_680 Hb_001269_680 Hb_007778_030--Hb_001269_680 Hb_007778_030--Hb_165132_010 Hb_007778_030--Hb_000163_160 Hb_000160_130 Hb_000160_130 Hb_007778_030--Hb_000160_130 Hb_002007_060 Hb_002007_060 Hb_000000_160--Hb_002007_060 Hb_000000_160--Hb_023226_040 Hb_000661_250 Hb_000661_250 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000000_160--Hb_000494_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.54 27.7165 62.6026 47.8429 72.71 93.0391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.468 133.353 58.1903 29.6927 19.0063

CAGE analysis