Hb_010407_050

Information

Type -
Description -
Location Contig10407: 49836-60514
Sequence    

Annotation

kegg
ID vvi:100252887
description serine/threonine-protein kinase tricorner
nr
ID XP_012069854.1
description PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
swissprot
ID Q2LZZ7
description Serine/threonine-protein kinase tricorner OS=Drosophila pseudoobscura pseudoobscura GN=trc PE=3 SV=1
trembl
ID A0A067KVX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02344 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase tricorner-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01501: 49868-53965 , PASA_asmbl_01502: 51224-51344 , PASA_asmbl_01503: 58771-60399 , PASA_asmbl_01504: 59869-60143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_050 0.0 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
2 Hb_006688_050 0.0439095361 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
3 Hb_004994_010 0.0578534011 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
4 Hb_001488_200 0.0633214955 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
5 Hb_000879_180 0.0665968054 - - XPA-binding protein, putative [Ricinus communis]
6 Hb_003861_050 0.0703200027 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
7 Hb_001005_030 0.0712339061 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
8 Hb_013394_030 0.0728342062 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
9 Hb_000317_510 0.0749040381 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
10 Hb_001269_230 0.0753167008 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
11 Hb_001635_040 0.0755160815 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
12 Hb_000390_230 0.0772082543 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
13 Hb_000935_010 0.0773622138 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
14 Hb_000959_230 0.077952452 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
15 Hb_012506_030 0.0800099185 - - AP-2 complex subunit alpha, putative [Ricinus communis]
16 Hb_000373_080 0.0815320684 - - PREDICTED: serine decarboxylase [Jatropha curcas]
17 Hb_000359_040 0.0831880217 - - conserved hypothetical protein [Ricinus communis]
18 Hb_109980_010 0.0834903943 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
19 Hb_002078_110 0.0835756048 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
20 Hb_000567_070 0.0839111671 - - autophagy protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010407_050 Hb_010407_050 Hb_006688_050 Hb_006688_050 Hb_010407_050--Hb_006688_050 Hb_004994_010 Hb_004994_010 Hb_010407_050--Hb_004994_010 Hb_001488_200 Hb_001488_200 Hb_010407_050--Hb_001488_200 Hb_000879_180 Hb_000879_180 Hb_010407_050--Hb_000879_180 Hb_003861_050 Hb_003861_050 Hb_010407_050--Hb_003861_050 Hb_001005_030 Hb_001005_030 Hb_010407_050--Hb_001005_030 Hb_006688_050--Hb_001488_200 Hb_006688_050--Hb_004994_010 Hb_005965_030 Hb_005965_030 Hb_006688_050--Hb_005965_030 Hb_000928_220 Hb_000928_220 Hb_006688_050--Hb_000928_220 Hb_002078_110 Hb_002078_110 Hb_006688_050--Hb_002078_110 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_000339_040 Hb_000339_040 Hb_004994_010--Hb_000339_040 Hb_019654_040 Hb_019654_040 Hb_001488_200--Hb_019654_040 Hb_003638_090 Hb_003638_090 Hb_001488_200--Hb_003638_090 Hb_002375_010 Hb_002375_010 Hb_001488_200--Hb_002375_010 Hb_000390_320 Hb_000390_320 Hb_001488_200--Hb_000390_320 Hb_000096_120 Hb_000096_120 Hb_000879_180--Hb_000096_120 Hb_000567_190 Hb_000567_190 Hb_000879_180--Hb_000567_190 Hb_001377_310 Hb_001377_310 Hb_000879_180--Hb_001377_310 Hb_012506_030 Hb_012506_030 Hb_000879_180--Hb_012506_030 Hb_004096_180 Hb_004096_180 Hb_000879_180--Hb_004096_180 Hb_005867_070 Hb_005867_070 Hb_003861_050--Hb_005867_070 Hb_002889_010 Hb_002889_010 Hb_003861_050--Hb_002889_010 Hb_003861_050--Hb_001377_310 Hb_002805_190 Hb_002805_190 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2578 15.8019 24.976 14.7674 20.3984 17.0991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.97145 12.0478 15.1848 16.6096 11.5731

CAGE analysis