Hb_010407_080

Information

Type -
Description -
Location Contig10407: 81759-87560
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16740g
description POPTRDRAFT_721099; hypothetical protein
nr
ID XP_012069849.1
description PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
swissprot
ID Q4FE47
description Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1
trembl
ID A0A067KW28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02340 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01511: 81791-87496 , PASA_asmbl_01512: 81791-87496 , PASA_asmbl_01513: 81791-87496 , PASA_asmbl_01514: 84711-84911 , PASA_asmbl_01515: 84280-84425
cDNA
(Sanger)
(ID:Location)		 005_I14.ab1: 85449-87496

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_080 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
2 Hb_007839_020 0.0457663079 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002686_230 0.0592060798 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_022425_060 0.0669051519 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
5 Hb_001269_380 0.0679256664 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
6 Hb_001329_200 0.0682226301 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
7 Hb_033312_130 0.0735626155 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
8 Hb_000347_400 0.0753573456 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
9 Hb_001408_110 0.0760103764 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
10 Hb_011360_050 0.0782843123 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
11 Hb_003929_210 0.0791714679 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
12 Hb_000008_240 0.0811650453 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002768_050 0.0818586045 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
14 Hb_009288_010 0.0827539424 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_002272_030 0.0841271026 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
16 Hb_000059_240 0.0844442627 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
17 Hb_024650_080 0.0847838908 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
18 Hb_001473_110 0.0851012904 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
19 Hb_000327_140 0.0865871735 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
20 Hb_002631_210 0.0873457391 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]

Gene co-expression network

sample Hb_010407_080 Hb_010407_080 Hb_007839_020 Hb_007839_020 Hb_010407_080--Hb_007839_020 Hb_002686_230 Hb_002686_230 Hb_010407_080--Hb_002686_230 Hb_022425_060 Hb_022425_060 Hb_010407_080--Hb_022425_060 Hb_001269_380 Hb_001269_380 Hb_010407_080--Hb_001269_380 Hb_001329_200 Hb_001329_200 Hb_010407_080--Hb_001329_200 Hb_033312_130 Hb_033312_130 Hb_010407_080--Hb_033312_130 Hb_011360_050 Hb_011360_050 Hb_007839_020--Hb_011360_050 Hb_007839_020--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_007839_020--Hb_001328_080 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_007839_020--Hb_022425_060 Hb_009288_010 Hb_009288_010 Hb_002686_230--Hb_009288_010 Hb_009658_030 Hb_009658_030 Hb_002686_230--Hb_009658_030 Hb_002686_230--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_002686_230--Hb_001008_130 Hb_002686_230--Hb_022425_060 Hb_001828_170 Hb_001828_170 Hb_022425_060--Hb_001828_170 Hb_020805_150 Hb_020805_150 Hb_022425_060--Hb_020805_150 Hb_022425_060--Hb_001329_200 Hb_003918_030 Hb_003918_030 Hb_022425_060--Hb_003918_030 Hb_004677_050 Hb_004677_050 Hb_001269_380--Hb_004677_050 Hb_016172_030 Hb_016172_030 Hb_001269_380--Hb_016172_030 Hb_002982_020 Hb_002982_020 Hb_001269_380--Hb_002982_020 Hb_006452_120 Hb_006452_120 Hb_001269_380--Hb_006452_120 Hb_008948_020 Hb_008948_020 Hb_001269_380--Hb_008948_020 Hb_009615_160 Hb_009615_160 Hb_001329_200--Hb_009615_160 Hb_000802_090 Hb_000802_090 Hb_001329_200--Hb_000802_090 Hb_001329_200--Hb_011360_050 Hb_001329_200--Hb_001328_080 Hb_003929_210 Hb_003929_210 Hb_033312_130--Hb_003929_210 Hb_033312_130--Hb_001008_130 Hb_006100_020 Hb_006100_020 Hb_033312_130--Hb_006100_020 Hb_000960_080 Hb_000960_080 Hb_033312_130--Hb_000960_080 Hb_000035_100 Hb_000035_100 Hb_033312_130--Hb_000035_100 Hb_002357_070 Hb_002357_070 Hb_033312_130--Hb_002357_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8226 67.9347 42.029 46.0432 20.0145 23.5972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.412 23.2557 28.2276 43.0596 44.7038

CAGE analysis