Hb_010407_090

Information

Type -
Description -
Location Contig10407: 88569-93300
Sequence    

Annotation

kegg
ID rcu:RCOM_0400480
description oxidoreductase, putative (EC:1.1.1.21)
nr
ID XP_012069843.1
description PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
swissprot
ID P0A9T5
description Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1
trembl
ID A0A067L761
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02338 PE=4 SV=1
Gene Ontology
ID GO:0009570
description aldo-keto reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01517: 88585-93368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_090 0.0 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
2 Hb_107647_010 0.0942405935 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
3 Hb_002249_090 0.1045864373 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
4 Hb_002609_140 0.1167537066 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002006_050 0.1300789157 - - actin binding protein, putative [Ricinus communis]
6 Hb_000174_080 0.1304924169 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
7 Hb_000261_470 0.1379753931 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
8 Hb_000676_320 0.1383918889 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
9 Hb_003847_070 0.1392954784 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
10 Hb_020805_050 0.1406355806 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
11 Hb_004525_010 0.1411299696 - - late embryogenesis abundant, putative [Ricinus communis]
12 Hb_003602_100 0.1420808978 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
13 Hb_004837_230 0.1435226217 - - unknown [Populus trichocarpa]
14 Hb_000083_180 0.1440607825 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
15 Hb_117807_020 0.1444977432 - - methyltransferase, putative [Ricinus communis]
16 Hb_107373_010 0.1447219057 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
17 Hb_003106_160 0.1471592669 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
18 Hb_046615_030 0.1489949515 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
19 Hb_005399_040 0.1493565679 - - RNA polymerase beta subunit [Hevea brasiliensis]
20 Hb_006198_030 0.1497079792 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010407_090 Hb_010407_090 Hb_107647_010 Hb_107647_010 Hb_010407_090--Hb_107647_010 Hb_002249_090 Hb_002249_090 Hb_010407_090--Hb_002249_090 Hb_002609_140 Hb_002609_140 Hb_010407_090--Hb_002609_140 Hb_002006_050 Hb_002006_050 Hb_010407_090--Hb_002006_050 Hb_000174_080 Hb_000174_080 Hb_010407_090--Hb_000174_080 Hb_000261_470 Hb_000261_470 Hb_010407_090--Hb_000261_470 Hb_107647_010--Hb_002609_140 Hb_107647_010--Hb_002249_090 Hb_005977_040 Hb_005977_040 Hb_107647_010--Hb_005977_040 Hb_107373_010 Hb_107373_010 Hb_107647_010--Hb_107373_010 Hb_117807_020 Hb_117807_020 Hb_107647_010--Hb_117807_020 Hb_003602_100 Hb_003602_100 Hb_002249_090--Hb_003602_100 Hb_002249_090--Hb_000174_080 Hb_002249_090--Hb_002609_140 Hb_000544_070 Hb_000544_070 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_002609_140--Hb_005977_040 Hb_002609_140--Hb_000544_070 Hb_004306_090 Hb_004306_090 Hb_002609_140--Hb_004306_090 Hb_002609_140--Hb_117807_020 Hb_000261_390 Hb_000261_390 Hb_002006_050--Hb_000261_390 Hb_000805_080 Hb_000805_080 Hb_002006_050--Hb_000805_080 Hb_000010_380 Hb_000010_380 Hb_002006_050--Hb_000010_380 Hb_032631_060 Hb_032631_060 Hb_002006_050--Hb_032631_060 Hb_185830_050 Hb_185830_050 Hb_002006_050--Hb_185830_050 Hb_003053_080 Hb_003053_080 Hb_002006_050--Hb_003053_080 Hb_137216_010 Hb_137216_010 Hb_000174_080--Hb_137216_010 Hb_002071_030 Hb_002071_030 Hb_000174_080--Hb_002071_030 Hb_000174_080--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_000174_080--Hb_007803_040 Hb_000009_510 Hb_000009_510 Hb_000174_080--Hb_000009_510 Hb_011537_140 Hb_011537_140 Hb_000261_470--Hb_011537_140 Hb_000367_230 Hb_000367_230 Hb_000261_470--Hb_000367_230 Hb_020805_050 Hb_020805_050 Hb_000261_470--Hb_020805_050 Hb_007101_120 Hb_007101_120 Hb_000261_470--Hb_007101_120 Hb_004837_230 Hb_004837_230 Hb_000261_470--Hb_004837_230 Hb_001287_020 Hb_001287_020 Hb_000261_470--Hb_001287_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.377515 1.08589 35.5622 4.1291 0.574467 1.59491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.580386 0.963929 0.714107 0.557108 64.2958

CAGE analysis