Hb_010407_130

Information

Type -
Description -
Location Contig10407: 140654-141262
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16680g
description POPTRDRAFT_564943; hypothetical protein
nr
ID XP_002312584.1
description hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HKG8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16680g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_130 0.0 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
2 Hb_000103_450 0.0461894618 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
3 Hb_004435_020 0.0712893798 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
4 Hb_006846_040 0.0842304695 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
5 Hb_000003_280 0.08689523 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000392_110 0.087277741 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_000483_450 0.0887607887 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
8 Hb_000878_050 0.0899712864 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
9 Hb_004202_020 0.0903797067 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010962_020 0.0908490512 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
11 Hb_001047_090 0.092985999 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
12 Hb_004223_060 0.0940938496 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
13 Hb_012653_050 0.0943143786 - - hypothetical protein RCOM_0460020 [Ricinus communis]
14 Hb_007163_100 0.0946291919 - - BnaC03g52280D [Brassica napus]
15 Hb_000028_190 0.0949053977 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
16 Hb_053264_010 0.0978692958 - - beta glucosidase [Hevea brasiliensis]
17 Hb_000003_370 0.0981386971 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
18 Hb_010883_170 0.1007936151 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
19 Hb_001095_020 0.1021511326 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
20 Hb_001898_040 0.1035199954 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_010407_130 Hb_010407_130 Hb_000103_450 Hb_000103_450 Hb_010407_130--Hb_000103_450 Hb_004435_020 Hb_004435_020 Hb_010407_130--Hb_004435_020 Hb_006846_040 Hb_006846_040 Hb_010407_130--Hb_006846_040 Hb_000003_280 Hb_000003_280 Hb_010407_130--Hb_000003_280 Hb_000392_110 Hb_000392_110 Hb_010407_130--Hb_000392_110 Hb_000483_450 Hb_000483_450 Hb_010407_130--Hb_000483_450 Hb_053264_010 Hb_053264_010 Hb_000103_450--Hb_053264_010 Hb_000103_450--Hb_006846_040 Hb_000103_450--Hb_004435_020 Hb_001047_090 Hb_001047_090 Hb_000103_450--Hb_001047_090 Hb_012653_050 Hb_012653_050 Hb_000103_450--Hb_012653_050 Hb_000878_050 Hb_000878_050 Hb_004435_020--Hb_000878_050 Hb_005976_110 Hb_005976_110 Hb_004435_020--Hb_005976_110 Hb_001095_020 Hb_001095_020 Hb_004435_020--Hb_001095_020 Hb_007811_020 Hb_007811_020 Hb_004435_020--Hb_007811_020 Hb_006846_040--Hb_053264_010 Hb_006846_040--Hb_001047_090 Hb_138585_010 Hb_138585_010 Hb_006846_040--Hb_138585_010 Hb_010962_020 Hb_010962_020 Hb_006846_040--Hb_010962_020 Hb_000903_040 Hb_000903_040 Hb_006846_040--Hb_000903_040 Hb_000003_280--Hb_000878_050 Hb_000003_280--Hb_010962_020 Hb_000003_280--Hb_053264_010 Hb_000003_280--Hb_000103_450 Hb_001898_040 Hb_001898_040 Hb_000003_280--Hb_001898_040 Hb_000003_280--Hb_006846_040 Hb_004202_020 Hb_004202_020 Hb_000392_110--Hb_004202_020 Hb_000392_110--Hb_000483_450 Hb_000392_110--Hb_000878_050 Hb_001117_050 Hb_001117_050 Hb_000392_110--Hb_001117_050 Hb_003894_110 Hb_003894_110 Hb_000392_110--Hb_003894_110 Hb_000392_110--Hb_001047_090 Hb_000483_450--Hb_004202_020 Hb_004137_040 Hb_004137_040 Hb_000483_450--Hb_004137_040 Hb_000028_190 Hb_000028_190 Hb_000483_450--Hb_000028_190 Hb_002221_060 Hb_002221_060 Hb_000483_450--Hb_002221_060 Hb_000483_450--Hb_003894_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235636 0.824539 9.32635 18.0593 0 0.15164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.572527 8.8844

CAGE analysis