Hb_010407_140

Information

Type -
Description -
Location Contig10407: 142516-150789
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16670g
description POPTRDRAFT_564942; cytosolic malate dehydrogenase family protein
nr
ID XP_012069835.1
description PREDICTED: malate dehydrogenase [Jatropha curcas]
swissprot
ID Q08062
description Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2
trembl
ID A0A067KZE2
description Malate dehydrogenase OS=Jatropha curcas GN=JCGZ_02331 PE=3 SV=1
Gene Ontology
ID GO:0030060
description malate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01520: 142668-150724
cDNA
(Sanger)
(ID:Location)		 028_B10.ab1: 142676-149053

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_140 0.0 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
2 Hb_007894_010 0.0594120741 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
3 Hb_001633_080 0.0769529443 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
4 Hb_000197_020 0.0798534603 - - PREDICTED: protein RER1A [Jatropha curcas]
5 Hb_006570_160 0.0833312931 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
6 Hb_000127_140 0.0842888697 - - transporter-related family protein [Populus trichocarpa]
7 Hb_011282_060 0.0863469208 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
8 Hb_000066_030 0.0879706231 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
9 Hb_003998_040 0.0885823173 - - organic anion transporter, putative [Ricinus communis]
10 Hb_001957_010 0.0901474637 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
11 Hb_052805_010 0.0945951166 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
12 Hb_002676_120 0.0977943571 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
13 Hb_010368_050 0.0993851413 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
14 Hb_000395_280 0.1001165451 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
15 Hb_011214_160 0.101574584 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
16 Hb_000721_030 0.1025617939 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
17 Hb_000260_470 0.1025730511 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
18 Hb_005218_020 0.1032053741 - - Uncharacterized protein isoform 3 [Theobroma cacao]
19 Hb_062537_010 0.1050602735 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
20 Hb_002660_150 0.1060326695 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010407_140 Hb_010407_140 Hb_007894_010 Hb_007894_010 Hb_010407_140--Hb_007894_010 Hb_001633_080 Hb_001633_080 Hb_010407_140--Hb_001633_080 Hb_000197_020 Hb_000197_020 Hb_010407_140--Hb_000197_020 Hb_006570_160 Hb_006570_160 Hb_010407_140--Hb_006570_160 Hb_000127_140 Hb_000127_140 Hb_010407_140--Hb_000127_140 Hb_011282_060 Hb_011282_060 Hb_010407_140--Hb_011282_060 Hb_007894_010--Hb_000127_140 Hb_005701_120 Hb_005701_120 Hb_007894_010--Hb_005701_120 Hb_007894_010--Hb_000197_020 Hb_000136_100 Hb_000136_100 Hb_007894_010--Hb_000136_100 Hb_001957_010 Hb_001957_010 Hb_007894_010--Hb_001957_010 Hb_003998_040 Hb_003998_040 Hb_001633_080--Hb_003998_040 Hb_009193_090 Hb_009193_090 Hb_001633_080--Hb_009193_090 Hb_003988_050 Hb_003988_050 Hb_001633_080--Hb_003988_050 Hb_001633_080--Hb_001957_010 Hb_062537_010 Hb_062537_010 Hb_001633_080--Hb_062537_010 Hb_000066_030 Hb_000066_030 Hb_000197_020--Hb_000066_030 Hb_000197_020--Hb_003998_040 Hb_004055_120 Hb_004055_120 Hb_000197_020--Hb_004055_120 Hb_000705_230 Hb_000705_230 Hb_000197_020--Hb_000705_230 Hb_011214_160 Hb_011214_160 Hb_000197_020--Hb_011214_160 Hb_000260_470 Hb_000260_470 Hb_006570_160--Hb_000260_470 Hb_006570_160--Hb_011282_060 Hb_005271_040 Hb_005271_040 Hb_006570_160--Hb_005271_040 Hb_002676_120 Hb_002676_120 Hb_006570_160--Hb_002676_120 Hb_000666_100 Hb_000666_100 Hb_006570_160--Hb_000666_100 Hb_008147_090 Hb_008147_090 Hb_000127_140--Hb_008147_090 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_001195_060 Hb_001195_060 Hb_000127_140--Hb_001195_060 Hb_000127_140--Hb_000666_100 Hb_002184_090 Hb_002184_090 Hb_000127_140--Hb_002184_090 Hb_052805_010 Hb_052805_010 Hb_011282_060--Hb_052805_010 Hb_003528_030 Hb_003528_030 Hb_011282_060--Hb_003528_030 Hb_001227_130 Hb_001227_130 Hb_011282_060--Hb_001227_130 Hb_001269_330 Hb_001269_330 Hb_011282_060--Hb_001269_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0329 9.81759 42.0933 60.6248 14.8393 23.0279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.411 22.2668 27.3875 33.7185 24.2031

CAGE analysis