Hb_010407_180

Information

Type -
Description -
Location Contig10407: 177762-178940
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08220g
description hypothetical protein
nr
ID XP_012069828.1
description PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
swissprot
ID Q9SPK4
description Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1
trembl
ID A0A067KZE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02326 PE=4 SV=1
Gene Ontology
ID GO:0004683
description phosphoenolpyruvate carboxylase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01527: 177767-178915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010407_180 0.0 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
2 Hb_000120_960 0.0773725005 - - isocitrate dehydrogenase, putative [Ricinus communis]
3 Hb_001279_340 0.0909030649 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
4 Hb_000125_030 0.0965542171 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
5 Hb_000563_250 0.0967839819 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
6 Hb_005928_100 0.1026880529 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
7 Hb_003582_040 0.1030498623 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
8 Hb_002284_200 0.1035226127 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
9 Hb_021409_160 0.1046246352 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
10 Hb_001096_110 0.1046854359 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
11 Hb_000141_020 0.10692288 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
12 Hb_002660_070 0.1080634291 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
13 Hb_000406_120 0.1099884144 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
14 Hb_000147_040 0.1102514459 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
15 Hb_000392_310 0.1107426484 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000117_090 0.1117547313 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
17 Hb_000592_020 0.1141892271 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
18 Hb_129204_030 0.1146081669 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
19 Hb_002043_050 0.1153529538 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
20 Hb_001199_050 0.1181323516 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010407_180 Hb_010407_180 Hb_000120_960 Hb_000120_960 Hb_010407_180--Hb_000120_960 Hb_001279_340 Hb_001279_340 Hb_010407_180--Hb_001279_340 Hb_000125_030 Hb_000125_030 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_002660_070 Hb_002660_070 Hb_000120_960--Hb_002660_070 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_020805_130 Hb_020805_130 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_001279_340--Hb_006831_120 Hb_001279_340--Hb_002660_070 Hb_001279_340--Hb_000120_960 Hb_002284_200 Hb_002284_200 Hb_001279_340--Hb_002284_200 Hb_001545_100 Hb_001545_100 Hb_001279_340--Hb_001545_100 Hb_000406_120 Hb_000406_120 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_003504_020 Hb_003504_020 Hb_000125_030--Hb_003504_020 Hb_000141_020 Hb_000141_020 Hb_000125_030--Hb_000141_020 Hb_001616_030 Hb_001616_030 Hb_000563_250--Hb_001616_030 Hb_000120_680 Hb_000120_680 Hb_000563_250--Hb_000120_680 Hb_000240_090 Hb_000240_090 Hb_000563_250--Hb_000240_090 Hb_021409_030 Hb_021409_030 Hb_000563_250--Hb_021409_030 Hb_000563_250--Hb_000086_280 Hb_021409_160 Hb_021409_160 Hb_000563_250--Hb_021409_160 Hb_002043_050 Hb_002043_050 Hb_005928_100--Hb_002043_050 Hb_000111_450 Hb_000111_450 Hb_005928_100--Hb_000111_450 Hb_005928_100--Hb_002284_200 Hb_003994_190 Hb_003994_190 Hb_005928_100--Hb_003994_190 Hb_005928_100--Hb_000120_960 Hb_000592_020 Hb_000592_020 Hb_003582_040--Hb_000592_020 Hb_003582_040--Hb_000141_020 Hb_000147_040 Hb_000147_040 Hb_003582_040--Hb_000147_040 Hb_000258_330 Hb_000258_330 Hb_003582_040--Hb_000258_330 Hb_005569_020 Hb_005569_020 Hb_003582_040--Hb_005569_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.8483 26.0636 26.6436 28.5807 17.4077 14.3116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.2874 70.6102 96.6423 17.3381 17.4264

CAGE analysis