Hb_010417_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig10417: 3351-10939
Sequence    

Annotation

kegg
ID rcu:RCOM_1689100
description WRKY transcription factor, putative
nr
ID XP_002509862.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID O04609
description WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1
trembl
ID B9RCH8
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1689100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_010 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_000009_070 0.1506206741 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
3 Hb_002073_120 0.1917621719 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
4 Hb_000995_070 0.1955369423 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_004208_100 0.2184727501 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
6 Hb_100873_030 0.2200374827 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
7 Hb_001534_170 0.220174143 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
8 Hb_000141_240 0.2239951183 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
9 Hb_018954_010 0.2339517809 - - -
10 Hb_174876_010 0.2366142764 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_002522_020 0.2497923685 - - hypothetical protein B456_011G148700, partial [Gossypium raimondii]
12 Hb_005532_010 0.261256654 - - -
13 Hb_002513_030 0.2627205201 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
14 Hb_080653_010 0.2627620208 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000172_570 0.2653367757 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
16 Hb_001114_340 0.2789443356 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
17 Hb_000964_060 0.2794530805 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
18 Hb_000083_040 0.2799166085 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005483_010 0.281708482 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
20 Hb_074238_010 0.2848838739 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]

Gene co-expression network

sample Hb_010417_010 Hb_010417_010 Hb_000009_070 Hb_000009_070 Hb_010417_010--Hb_000009_070 Hb_002073_120 Hb_002073_120 Hb_010417_010--Hb_002073_120 Hb_000995_070 Hb_000995_070 Hb_010417_010--Hb_000995_070 Hb_004208_100 Hb_004208_100 Hb_010417_010--Hb_004208_100 Hb_100873_030 Hb_100873_030 Hb_010417_010--Hb_100873_030 Hb_001534_170 Hb_001534_170 Hb_010417_010--Hb_001534_170 Hb_000009_070--Hb_100873_030 Hb_000083_040 Hb_000083_040 Hb_000009_070--Hb_000083_040 Hb_000009_070--Hb_002073_120 Hb_154340_010 Hb_154340_010 Hb_000009_070--Hb_154340_010 Hb_000141_240 Hb_000141_240 Hb_000009_070--Hb_000141_240 Hb_000172_570 Hb_000172_570 Hb_002073_120--Hb_000172_570 Hb_002073_120--Hb_000995_070 Hb_002073_120--Hb_004208_100 Hb_002073_120--Hb_000141_240 Hb_000995_070--Hb_100873_030 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000784_040 Hb_000784_040 Hb_000995_070--Hb_000784_040 Hb_000995_070--Hb_000172_570 Hb_004208_100--Hb_000172_570 Hb_004208_100--Hb_000995_070 Hb_011316_120 Hb_011316_120 Hb_004208_100--Hb_011316_120 Hb_003754_080 Hb_003754_080 Hb_004208_100--Hb_003754_080 Hb_100873_030--Hb_000141_240 Hb_042223_010 Hb_042223_010 Hb_100873_030--Hb_042223_010 Hb_018954_010 Hb_018954_010 Hb_100873_030--Hb_018954_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_001534_170--Hb_018954_010 Hb_001534_170--Hb_000995_070 Hb_001534_170--Hb_100873_030 Hb_004871_050 Hb_004871_050 Hb_001534_170--Hb_004871_050 Hb_174876_010 Hb_174876_010 Hb_001534_170--Hb_174876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0932394 0 0 0 0.130597 0.217633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150714 0.434636 3.78359 0.603709 0

CAGE analysis