Hb_010417_050

Information

Type -
Description -
Location Contig10417: 27697-35842
Sequence    

Annotation

kegg
ID rcu:RCOM_1689130
description hypothetical protein
nr
ID XP_012086817.1
description PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
swissprot
ID Q9Y4E6
description WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2
trembl
ID A0A067JNC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20533 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01533: 27665-31429 , PASA_asmbl_01534: 32498-34433 , PASA_asmbl_01535: 34527-34842 , PASA_asmbl_01536: 34843-35728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_050 0.0 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
2 Hb_003988_010 0.0603975752 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
3 Hb_014267_010 0.0673812291 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
4 Hb_004228_010 0.0711226961 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
5 Hb_001199_100 0.0790805511 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
6 Hb_000101_240 0.0791507057 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
7 Hb_001700_040 0.0799328335 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
8 Hb_000261_350 0.0813458085 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
9 Hb_002811_060 0.0815277038 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
10 Hb_002053_080 0.0833768607 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Jatropha curcas]
11 Hb_003605_110 0.0836930062 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
12 Hb_000574_070 0.0844136501 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
13 Hb_006637_050 0.0860012153 - - PREDICTED: ethylene-insensitive protein 2 [Jatropha curcas]
14 Hb_002493_020 0.0864049779 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
15 Hb_000343_120 0.0876169398 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
16 Hb_005901_020 0.0884367779 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
17 Hb_003044_020 0.0890117992 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
18 Hb_000796_040 0.0894036395 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_007586_030 0.0905372019 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
20 Hb_002150_030 0.0906033708 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_010417_050 Hb_010417_050 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_014267_010 Hb_014267_010 Hb_010417_050--Hb_014267_010 Hb_004228_010 Hb_004228_010 Hb_010417_050--Hb_004228_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040 Hb_002811_060 Hb_002811_060 Hb_003988_010--Hb_002811_060 Hb_000116_500 Hb_000116_500 Hb_003988_010--Hb_000116_500 Hb_003605_110 Hb_003605_110 Hb_003988_010--Hb_003605_110 Hb_003988_010--Hb_004228_010 Hb_002053_080 Hb_002053_080 Hb_003988_010--Hb_002053_080 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_014267_010--Hb_004228_010 Hb_004306_080 Hb_004306_080 Hb_004228_010--Hb_004306_080 Hb_000796_040 Hb_000796_040 Hb_004228_010--Hb_000796_040 Hb_001472_090 Hb_001472_090 Hb_004228_010--Hb_001472_090 Hb_002493_020 Hb_002493_020 Hb_004228_010--Hb_002493_020 Hb_003253_040 Hb_003253_040 Hb_001199_100--Hb_003253_040 Hb_000343_120 Hb_000343_120 Hb_001199_100--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_001199_100--Hb_000166_130 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_009545_100 Hb_009545_100 Hb_001199_100--Hb_009545_100 Hb_172632_080 Hb_172632_080 Hb_001199_100--Hb_172632_080 Hb_009411_010 Hb_009411_010 Hb_000101_240--Hb_009411_010 Hb_016898_010 Hb_016898_010 Hb_000101_240--Hb_016898_010 Hb_003428_070 Hb_003428_070 Hb_000101_240--Hb_003428_070 Hb_000084_120 Hb_000084_120 Hb_000101_240--Hb_000084_120 Hb_048476_180 Hb_048476_180 Hb_000101_240--Hb_048476_180 Hb_003362_070 Hb_003362_070 Hb_000101_240--Hb_003362_070 Hb_000457_260 Hb_000457_260 Hb_001700_040--Hb_000457_260 Hb_000318_510 Hb_000318_510 Hb_001700_040--Hb_000318_510 Hb_000283_070 Hb_000283_070 Hb_001700_040--Hb_000283_070 Hb_000878_010 Hb_000878_010 Hb_001700_040--Hb_000878_010 Hb_005679_050 Hb_005679_050 Hb_001700_040--Hb_005679_050 Hb_001700_040--Hb_000101_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7489 11.3239 3.49259 8.2205 16.8515 21.656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.83444 7.41356 15.6953 11.5173 11.2597

CAGE analysis