Hb_010417_080

Information

Type -
Description -
Location Contig10417: 53894-58763
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09950g
description POPTRDRAFT_548411; hypothetical protein
nr
ID XP_012086810.1
description PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20529 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01540: 53942-57239 , PASA_asmbl_01541: 57312-58700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_080 0.0 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
2 Hb_004577_020 0.0613199632 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
3 Hb_001221_100 0.0753404479 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
4 Hb_005064_060 0.0858319851 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_004046_050 0.0866065224 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
6 Hb_011218_040 0.0866936073 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
7 Hb_039946_020 0.0873926099 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006502_070 0.0898790228 - - separase, putative [Ricinus communis]
9 Hb_000629_010 0.0898897928 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
10 Hb_001936_020 0.09241358 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
11 Hb_000086_380 0.0925460519 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
12 Hb_011671_430 0.0928924641 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
13 Hb_000041_270 0.0930512643 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
14 Hb_010931_120 0.0931736351 - - myosin heavy chain-related family protein [Populus trichocarpa]
15 Hb_000630_050 0.0937171949 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001489_150 0.094535116 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
17 Hb_004355_020 0.0952561071 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
18 Hb_017224_030 0.0956123101 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
19 Hb_003693_070 0.0958915692 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
20 Hb_005291_030 0.0966493694 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_010417_080 Hb_010417_080 Hb_004577_020 Hb_004577_020 Hb_010417_080--Hb_004577_020 Hb_001221_100 Hb_001221_100 Hb_010417_080--Hb_001221_100 Hb_005064_060 Hb_005064_060 Hb_010417_080--Hb_005064_060 Hb_004046_050 Hb_004046_050 Hb_010417_080--Hb_004046_050 Hb_011218_040 Hb_011218_040 Hb_010417_080--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_010417_080--Hb_039946_020 Hb_011671_430 Hb_011671_430 Hb_004577_020--Hb_011671_430 Hb_000853_350 Hb_000853_350 Hb_004577_020--Hb_000853_350 Hb_001936_020 Hb_001936_020 Hb_004577_020--Hb_001936_020 Hb_000853_170 Hb_000853_170 Hb_004577_020--Hb_000853_170 Hb_003952_070 Hb_003952_070 Hb_004577_020--Hb_003952_070 Hb_005291_030 Hb_005291_030 Hb_001221_100--Hb_005291_030 Hb_002303_070 Hb_002303_070 Hb_001221_100--Hb_002303_070 Hb_005730_120 Hb_005730_120 Hb_001221_100--Hb_005730_120 Hb_024071_020 Hb_024071_020 Hb_001221_100--Hb_024071_020 Hb_003126_050 Hb_003126_050 Hb_001221_100--Hb_003126_050 Hb_005064_060--Hb_011218_040 Hb_005064_060--Hb_004577_020 Hb_000260_270 Hb_000260_270 Hb_005064_060--Hb_000260_270 Hb_035398_020 Hb_035398_020 Hb_005064_060--Hb_035398_020 Hb_017224_030 Hb_017224_030 Hb_005064_060--Hb_017224_030 Hb_003693_070 Hb_003693_070 Hb_004046_050--Hb_003693_070 Hb_000020_150 Hb_000020_150 Hb_004046_050--Hb_000020_150 Hb_000345_380 Hb_000345_380 Hb_004046_050--Hb_000345_380 Hb_000039_220 Hb_000039_220 Hb_004046_050--Hb_000039_220 Hb_006827_020 Hb_006827_020 Hb_004046_050--Hb_006827_020 Hb_004046_050--Hb_001221_100 Hb_000629_010 Hb_000629_010 Hb_011218_040--Hb_000629_010 Hb_004355_020 Hb_004355_020 Hb_011218_040--Hb_004355_020 Hb_011218_040--Hb_000260_270 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_012022_030 Hb_012022_030 Hb_039946_020--Hb_012022_030 Hb_039946_020--Hb_000629_010 Hb_004223_090 Hb_004223_090 Hb_039946_020--Hb_004223_090 Hb_000062_240 Hb_000062_240 Hb_039946_020--Hb_000062_240 Hb_003615_010 Hb_003615_010 Hb_039946_020--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_039946_020--Hb_002026_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1336 6.59744 4.43142 5.07845 5.92482 9.37126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.771 7.33091 5.40906 8.32151 2.3692

CAGE analysis