Hb_010417_090

Information

Type -
Description -
Location Contig10417: 59834-60565
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13300g
description POPTRDRAFT_799975; hypothetical protein
nr
ID XP_012086809.1
description PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
swissprot
ID A0MFL4
description Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2
trembl
ID B9GX29
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_090 0.0 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
2 Hb_000070_070 0.0969353001 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
3 Hb_000115_290 0.097710469 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
4 Hb_002970_070 0.1066723161 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
5 Hb_000994_100 0.1141498255 - - RALFL33, putative [Ricinus communis]
6 Hb_000856_250 0.1145702892 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
7 Hb_002236_010 0.1149773865 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
8 Hb_032260_130 0.117501528 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
9 Hb_002477_080 0.1207313003 - - hypothetical protein RCOM_0653450 [Ricinus communis]
10 Hb_000032_340 0.1260744049 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
11 Hb_002374_520 0.1265270131 - - early nodulin 8 precursor family protein [Populus trichocarpa]
12 Hb_000203_150 0.1363132149 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
13 Hb_002042_160 0.1390599411 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_135720_010 0.1406921322 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
15 Hb_183209_020 0.1413195589 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
16 Hb_000069_520 0.142182993 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
17 Hb_012787_050 0.142286481 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
18 Hb_103541_010 0.1429054553 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
19 Hb_000036_060 0.1437419516 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
20 Hb_001799_090 0.1446882425 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_010417_090 Hb_010417_090 Hb_000070_070 Hb_000070_070 Hb_010417_090--Hb_000070_070 Hb_000115_290 Hb_000115_290 Hb_010417_090--Hb_000115_290 Hb_002970_070 Hb_002970_070 Hb_010417_090--Hb_002970_070 Hb_000994_100 Hb_000994_100 Hb_010417_090--Hb_000994_100 Hb_000856_250 Hb_000856_250 Hb_010417_090--Hb_000856_250 Hb_002236_010 Hb_002236_010 Hb_010417_090--Hb_002236_010 Hb_012787_050 Hb_012787_050 Hb_000070_070--Hb_012787_050 Hb_000070_070--Hb_002236_010 Hb_023956_010 Hb_023956_010 Hb_000070_070--Hb_023956_010 Hb_003964_060 Hb_003964_060 Hb_000070_070--Hb_003964_060 Hb_002553_070 Hb_002553_070 Hb_000070_070--Hb_002553_070 Hb_032260_130 Hb_032260_130 Hb_000115_290--Hb_032260_130 Hb_116194_010 Hb_116194_010 Hb_000115_290--Hb_116194_010 Hb_000115_290--Hb_000994_100 Hb_000115_290--Hb_002970_070 Hb_002374_520 Hb_002374_520 Hb_000115_290--Hb_002374_520 Hb_002970_070--Hb_000994_100 Hb_002042_160 Hb_002042_160 Hb_002970_070--Hb_002042_160 Hb_055529_010 Hb_055529_010 Hb_002970_070--Hb_055529_010 Hb_130967_010 Hb_130967_010 Hb_002970_070--Hb_130967_010 Hb_000020_030 Hb_000020_030 Hb_002970_070--Hb_000020_030 Hb_000994_100--Hb_002042_160 Hb_000994_100--Hb_055529_010 Hb_029260_010 Hb_029260_010 Hb_000994_100--Hb_029260_010 Hb_000347_420 Hb_000347_420 Hb_000994_100--Hb_000347_420 Hb_000032_340 Hb_000032_340 Hb_000856_250--Hb_000032_340 Hb_016120_020 Hb_016120_020 Hb_000856_250--Hb_016120_020 Hb_000856_250--Hb_000070_070 Hb_000203_150 Hb_000203_150 Hb_000856_250--Hb_000203_150 Hb_000856_250--Hb_002236_010 Hb_002236_010--Hb_002553_070 Hb_005679_120 Hb_005679_120 Hb_002236_010--Hb_005679_120 Hb_002236_010--Hb_023956_010 Hb_000571_060 Hb_000571_060 Hb_002236_010--Hb_000571_060 Hb_007625_030 Hb_007625_030 Hb_002236_010--Hb_007625_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.323516 0.0628255 0.671554 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.376523 0.138855

CAGE analysis