Hb_010417_110

Information

Type -
Description -
Location Contig10417: 85478-86119
Sequence    

Annotation

kegg
ID rcu:RCOM_1689310
description hypothetical protein
nr
ID XP_002509872.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCI8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1689310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01543: 85571-86107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002725_080 0.091382322 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_009557_080 0.0991167946 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
4 Hb_004450_030 0.0999235395 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006002_020 0.1062601719 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
6 Hb_000375_150 0.1136454942 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005618_010 0.1175673727 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
8 Hb_097634_010 0.118385059 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
9 Hb_000181_390 0.1223372927 - - unknown [Lotus japonicus]
10 Hb_000892_030 0.124148844 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_004109_110 0.1269220104 - - dioxygenase family protein [Populus trichocarpa]
12 Hb_000047_010 0.1286904077 - - PREDICTED: expansin-like A1 [Jatropha curcas]
13 Hb_000024_020 0.1308542737 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
14 Hb_005694_150 0.1317180178 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
15 Hb_050847_030 0.1350309189 - - PREDICTED: cytochrome P450 714A1-like [Populus euphratica]
16 Hb_004879_030 0.1362315033 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
17 Hb_004724_300 0.1417350978 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
18 Hb_026415_010 0.1420545334 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_000325_070 0.1422422405 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_026050_010 0.1437795156 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_010417_110 Hb_010417_110 Hb_002725_080 Hb_002725_080 Hb_010417_110--Hb_002725_080 Hb_009557_080 Hb_009557_080 Hb_010417_110--Hb_009557_080 Hb_004450_030 Hb_004450_030 Hb_010417_110--Hb_004450_030 Hb_006002_020 Hb_006002_020 Hb_010417_110--Hb_006002_020 Hb_000375_150 Hb_000375_150 Hb_010417_110--Hb_000375_150 Hb_005618_010 Hb_005618_010 Hb_010417_110--Hb_005618_010 Hb_004724_300 Hb_004724_300 Hb_002725_080--Hb_004724_300 Hb_024650_010 Hb_024650_010 Hb_002725_080--Hb_024650_010 Hb_000574_230 Hb_000574_230 Hb_002725_080--Hb_000574_230 Hb_002725_080--Hb_009557_080 Hb_002725_080--Hb_006002_020 Hb_001269_240 Hb_001269_240 Hb_009557_080--Hb_001269_240 Hb_115114_010 Hb_115114_010 Hb_009557_080--Hb_115114_010 Hb_004879_030 Hb_004879_030 Hb_009557_080--Hb_004879_030 Hb_000140_220 Hb_000140_220 Hb_009557_080--Hb_000140_220 Hb_000181_390 Hb_000181_390 Hb_004450_030--Hb_000181_390 Hb_004450_030--Hb_005618_010 Hb_000258_230 Hb_000258_230 Hb_004450_030--Hb_000258_230 Hb_000068_040 Hb_000068_040 Hb_004450_030--Hb_000068_040 Hb_097634_010 Hb_097634_010 Hb_004450_030--Hb_097634_010 Hb_000418_060 Hb_000418_060 Hb_006002_020--Hb_000418_060 Hb_000047_010 Hb_000047_010 Hb_006002_020--Hb_000047_010 Hb_006153_020 Hb_006153_020 Hb_006002_020--Hb_006153_020 Hb_004109_110 Hb_004109_110 Hb_006002_020--Hb_004109_110 Hb_000329_170 Hb_000329_170 Hb_000375_150--Hb_000329_170 Hb_005694_150 Hb_005694_150 Hb_000375_150--Hb_005694_150 Hb_000325_070 Hb_000325_070 Hb_000375_150--Hb_000325_070 Hb_000375_150--Hb_002725_080 Hb_000375_150--Hb_000181_390 Hb_050847_030 Hb_050847_030 Hb_000375_150--Hb_050847_030 Hb_000172_070 Hb_000172_070 Hb_005618_010--Hb_000172_070 Hb_007292_050 Hb_007292_050 Hb_005618_010--Hb_007292_050 Hb_010267_030 Hb_010267_030 Hb_005618_010--Hb_010267_030 Hb_005618_010--Hb_000181_390 Hb_112145_010 Hb_112145_010 Hb_005618_010--Hb_112145_010 Hb_005618_010--Hb_002725_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.13941 26.2592 11.9707 21.1643 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.182899 0.790689 0 0.352407 11.5242

CAGE analysis