Hb_010422_020

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig10422: 24253-26798
Sequence    

Annotation

kegg
ID cic:CICLE_v10027024mg
description hypothetical protein
nr
ID XP_012081639.1
description PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
swissprot
ID Q6YXH5
description Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. japonica GN=ZHD1 PE=2 SV=1
trembl
ID A0A067KBY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18680 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010422_020 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]
2 Hb_001983_040 0.0462496545 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
3 Hb_059429_010 0.0626175233 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
4 Hb_001913_070 0.0812306594 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
5 Hb_000051_150 0.0837093146 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
6 Hb_104014_010 0.0890940664 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
7 Hb_000809_220 0.0944251136 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
8 Hb_000049_030 0.1072379341 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000152_650 0.1174280543 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_004308_030 0.1206241727 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
11 Hb_006620_030 0.1209960431 - - nitrate reductase, putative [Ricinus communis]
12 Hb_002121_030 0.122077153 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
13 Hb_005365_040 0.1222253409 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
14 Hb_001369_590 0.1266175739 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
15 Hb_006501_080 0.128408181 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
16 Hb_046590_010 0.1313524379 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
17 Hb_007007_100 0.1314796006 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
18 Hb_002499_050 0.1318646613 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_032731_010 0.1381430858 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
20 Hb_000349_170 0.1393258927 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]

Gene co-expression network

sample Hb_010422_020 Hb_010422_020 Hb_001983_040 Hb_001983_040 Hb_010422_020--Hb_001983_040 Hb_059429_010 Hb_059429_010 Hb_010422_020--Hb_059429_010 Hb_001913_070 Hb_001913_070 Hb_010422_020--Hb_001913_070 Hb_000051_150 Hb_000051_150 Hb_010422_020--Hb_000051_150 Hb_104014_010 Hb_104014_010 Hb_010422_020--Hb_104014_010 Hb_000809_220 Hb_000809_220 Hb_010422_020--Hb_000809_220 Hb_001983_040--Hb_059429_010 Hb_001983_040--Hb_001913_070 Hb_000049_030 Hb_000049_030 Hb_001983_040--Hb_000049_030 Hb_001983_040--Hb_000809_220 Hb_001983_040--Hb_000051_150 Hb_059429_010--Hb_000049_030 Hb_032731_010 Hb_032731_010 Hb_059429_010--Hb_032731_010 Hb_059429_010--Hb_001913_070 Hb_007007_100 Hb_007007_100 Hb_059429_010--Hb_007007_100 Hb_001913_070--Hb_104014_010 Hb_149985_030 Hb_149985_030 Hb_001913_070--Hb_149985_030 Hb_001913_070--Hb_000809_220 Hb_000349_170 Hb_000349_170 Hb_001913_070--Hb_000349_170 Hb_002121_030 Hb_002121_030 Hb_000051_150--Hb_002121_030 Hb_000051_150--Hb_000809_220 Hb_005365_040 Hb_005365_040 Hb_000051_150--Hb_005365_040 Hb_000051_150--Hb_104014_010 Hb_001369_590 Hb_001369_590 Hb_000051_150--Hb_001369_590 Hb_000152_650 Hb_000152_650 Hb_104014_010--Hb_000152_650 Hb_104014_010--Hb_001369_590 Hb_104014_010--Hb_005365_040 Hb_000809_220--Hb_002121_030 Hb_004308_030 Hb_004308_030 Hb_000809_220--Hb_004308_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.41502 9.45888 2.04959 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0370016 0 0 2.50834

CAGE analysis