Hb_010422_060

Information

Type -
Description -
Location Contig10422: 82854-89298
Sequence    

Annotation

kegg
ID rcu:RCOM_0408960
description hypothetical protein
nr
ID XP_012081638.1
description PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
swissprot
ID Q8S8F8
description GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1
trembl
ID A0A067KD58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18679 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01548: 89337-91379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010422_060 0.0 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
2 Hb_002830_030 0.0607601805 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
3 Hb_001059_030 0.0672008684 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
4 Hb_000504_140 0.0687716683 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
5 Hb_000062_220 0.069623692 - - BnaC02g35870D [Brassica napus]
6 Hb_005779_060 0.0741922733 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
7 Hb_004254_120 0.07419509 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000876_070 0.0745946807 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
9 Hb_004907_110 0.0781115611 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
10 Hb_005618_170 0.0784144831 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
11 Hb_004635_100 0.0797552506 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
12 Hb_032202_190 0.0808329616 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
13 Hb_189003_080 0.0808546547 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
14 Hb_158467_010 0.0815463921 - - transporter, putative [Ricinus communis]
15 Hb_001009_270 0.0816604065 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
16 Hb_005539_280 0.0827584785 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
17 Hb_002374_100 0.0829762965 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
18 Hb_007416_320 0.083083252 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002609_020 0.0834053167 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
20 Hb_001726_020 0.0837355921 - - PREDICTED: endophilin-A1 [Jatropha curcas]

Gene co-expression network

sample Hb_010422_060 Hb_010422_060 Hb_002830_030 Hb_002830_030 Hb_010422_060--Hb_002830_030 Hb_001059_030 Hb_001059_030 Hb_010422_060--Hb_001059_030 Hb_000504_140 Hb_000504_140 Hb_010422_060--Hb_000504_140 Hb_000062_220 Hb_000062_220 Hb_010422_060--Hb_000062_220 Hb_005779_060 Hb_005779_060 Hb_010422_060--Hb_005779_060 Hb_004254_120 Hb_004254_120 Hb_010422_060--Hb_004254_120 Hb_002830_030--Hb_005779_060 Hb_001009_270 Hb_001009_270 Hb_002830_030--Hb_001009_270 Hb_002110_150 Hb_002110_150 Hb_002830_030--Hb_002110_150 Hb_000876_070 Hb_000876_070 Hb_002830_030--Hb_000876_070 Hb_002830_030--Hb_000504_140 Hb_004635_100 Hb_004635_100 Hb_001059_030--Hb_004635_100 Hb_012053_070 Hb_012053_070 Hb_001059_030--Hb_012053_070 Hb_001059_030--Hb_000062_220 Hb_000240_090 Hb_000240_090 Hb_001059_030--Hb_000240_090 Hb_000059_370 Hb_000059_370 Hb_001059_030--Hb_000059_370 Hb_005539_280 Hb_005539_280 Hb_000504_140--Hb_005539_280 Hb_001758_100 Hb_001758_100 Hb_000504_140--Hb_001758_100 Hb_000504_140--Hb_005779_060 Hb_001633_050 Hb_001633_050 Hb_000504_140--Hb_001633_050 Hb_000317_240 Hb_000317_240 Hb_000504_140--Hb_000317_240 Hb_005618_170 Hb_005618_170 Hb_000504_140--Hb_005618_170 Hb_000062_220--Hb_005779_060 Hb_000062_220--Hb_000876_070 Hb_007416_320 Hb_007416_320 Hb_000062_220--Hb_007416_320 Hb_012019_010 Hb_012019_010 Hb_000062_220--Hb_012019_010 Hb_008725_260 Hb_008725_260 Hb_000062_220--Hb_008725_260 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_002046_180 Hb_002046_180 Hb_005779_060--Hb_002046_180 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_005779_060--Hb_002110_150 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1716 9.94959 10.1072 9.00718 15.3601 14.1914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2724 21.457 28.3607 12.6659 7.81477

CAGE analysis