Hb_010422_080

Information

Type -
Description -
Location Contig10422: 92009-92266
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010422_080 0.0 - - -
2 Hb_116349_010 0.1893201072 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
3 Hb_000317_530 0.2007792917 - - hypothetical protein, partial [Pseudomonas fluorescens]
4 Hb_000487_280 0.2121497515 - - -
5 Hb_002983_060 0.2342246016 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
6 Hb_000011_340 0.269041213 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
7 Hb_000062_410 0.2691339196 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
8 Hb_001520_020 0.2701976535 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
9 Hb_012163_030 0.2710805194 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
10 Hb_008954_010 0.2971318353 - - -
11 Hb_004907_020 0.2999812449 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
12 Hb_000031_040 0.302037415 - - centromere protein O [Medicago truncatula]
13 Hb_000613_150 0.3027238437 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
14 Hb_026740_010 0.310316293 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
15 Hb_153216_010 0.3109171924 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
16 Hb_001348_110 0.3215420129 - - PREDICTED: esterase-like [Jatropha curcas]
17 Hb_002260_160 0.3250899849 - - conserved hypothetical protein [Ricinus communis]
18 Hb_092820_010 0.3261442151 - - hypothetical protein CISIN_1g033834mg [Citrus sinensis]
19 Hb_001959_300 0.3314028207 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
20 Hb_001186_080 0.3443296956 - - PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_010422_080 Hb_010422_080 Hb_116349_010 Hb_116349_010 Hb_010422_080--Hb_116349_010 Hb_000317_530 Hb_000317_530 Hb_010422_080--Hb_000317_530 Hb_000487_280 Hb_000487_280 Hb_010422_080--Hb_000487_280 Hb_002983_060 Hb_002983_060 Hb_010422_080--Hb_002983_060 Hb_000011_340 Hb_000011_340 Hb_010422_080--Hb_000011_340 Hb_000062_410 Hb_000062_410 Hb_010422_080--Hb_000062_410 Hb_116349_010--Hb_002983_060 Hb_116349_010--Hb_000487_280 Hb_116349_010--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_116349_010--Hb_001520_020 Hb_001959_300 Hb_001959_300 Hb_116349_010--Hb_001959_300 Hb_000317_530--Hb_000062_410 Hb_000613_150 Hb_000613_150 Hb_000317_530--Hb_000613_150 Hb_012163_030 Hb_012163_030 Hb_000317_530--Hb_012163_030 Hb_000031_040 Hb_000031_040 Hb_000317_530--Hb_000031_040 Hb_000317_530--Hb_000487_280 Hb_000487_280--Hb_000011_340 Hb_000487_280--Hb_001520_020 Hb_008954_010 Hb_008954_010 Hb_000487_280--Hb_008954_010 Hb_001348_110 Hb_001348_110 Hb_000487_280--Hb_001348_110 Hb_092820_010 Hb_092820_010 Hb_002983_060--Hb_092820_010 Hb_002983_060--Hb_008954_010 Hb_004917_050 Hb_004917_050 Hb_002983_060--Hb_004917_050 Hb_002983_060--Hb_000011_340 Hb_000011_340--Hb_001520_020 Hb_000011_340--Hb_001348_110 Hb_000011_340--Hb_008954_010 Hb_000804_030 Hb_000804_030 Hb_000011_340--Hb_000804_030 Hb_000062_410--Hb_000031_040 Hb_000062_410--Hb_000011_340 Hb_000062_410--Hb_001520_020 Hb_000062_410--Hb_000487_280 Hb_000062_410--Hb_012163_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.530083 0 0.416724 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53886 4.24288 0 3.6588 0

CAGE analysis