Hb_010423_040

Information

Type -
Description -
Location Contig10423: 60111-61850
Sequence    

Annotation

kegg
ID rcu:RCOM_1378650
description 40S ribosomal protein S4, putative
nr
ID KDP45131.1
description hypothetical protein JCGZ_17463 [Jatropha curcas]
swissprot
ID P46300
description 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1
trembl
ID A0A067L9J7
description 40S ribosomal protein S4 OS=Jatropha curcas GN=JCGZ_17463 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01557: 60193-62081
cDNA
(Sanger)
(ID:Location)		 025_N09.ab1: 60471-62064 , 032_D09.ab1: 60587-62064 , 043_L12.ab1: 60541-62064 , 045_G17.ab1: 60565-62064 , 045_P12.ab1: 60692-62055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010423_040 0.0 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
2 Hb_008406_190 0.0763610669 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
3 Hb_003333_060 0.0791114721 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
4 Hb_002296_040 0.0840481328 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
5 Hb_005615_080 0.0859082301 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
6 Hb_000103_090 0.0876325306 - - PREDICTED: protein RDM1 [Jatropha curcas]
7 Hb_000103_080 0.0892092374 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
8 Hb_011150_010 0.0908050324 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
9 Hb_001006_190 0.0910766638 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
10 Hb_033834_040 0.0918739345 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002890_140 0.0927036706 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
12 Hb_002260_150 0.0928934251 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
13 Hb_002473_130 0.0932688548 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
14 Hb_002043_130 0.0934218929 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
15 Hb_003633_030 0.094863249 - - f-actin capping protein alpha, putative [Ricinus communis]
16 Hb_108350_010 0.0959456195 - - GTP-binding protein erg, putative [Ricinus communis]
17 Hb_033594_120 0.0959586585 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
18 Hb_007017_030 0.0962171161 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
19 Hb_002596_040 0.0975308785 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
20 Hb_002893_080 0.0981774052 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]

Gene co-expression network

sample Hb_010423_040 Hb_010423_040 Hb_008406_190 Hb_008406_190 Hb_010423_040--Hb_008406_190 Hb_003333_060 Hb_003333_060 Hb_010423_040--Hb_003333_060 Hb_002296_040 Hb_002296_040 Hb_010423_040--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_010423_040--Hb_005615_080 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_000103_080 Hb_000103_080 Hb_010423_040--Hb_000103_080 Hb_007017_030 Hb_007017_030 Hb_008406_190--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_008406_190--Hb_002893_080 Hb_008406_190--Hb_000103_080 Hb_008406_190--Hb_003333_060 Hb_001828_190 Hb_001828_190 Hb_008406_190--Hb_001828_190 Hb_003333_060--Hb_000103_080 Hb_000373_280 Hb_000373_280 Hb_003333_060--Hb_000373_280 Hb_063090_010 Hb_063090_010 Hb_003333_060--Hb_063090_010 Hb_000486_010 Hb_000486_010 Hb_003333_060--Hb_000486_010 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000326_090 Hb_000326_090 Hb_002296_040--Hb_000326_090 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_005615_080--Hb_002260_150 Hb_005615_080--Hb_002296_040 Hb_001009_300 Hb_001009_300 Hb_005615_080--Hb_001009_300 Hb_021238_050 Hb_021238_050 Hb_005615_080--Hb_021238_050 Hb_000003_730 Hb_000003_730 Hb_005615_080--Hb_000003_730 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_032717_080 Hb_032717_080 Hb_000103_090--Hb_032717_080 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190 Hb_033594_120 Hb_033594_120 Hb_000103_080--Hb_033594_120 Hb_000272_020 Hb_000272_020 Hb_000103_080--Hb_000272_020 Hb_000960_060 Hb_000960_060 Hb_000103_080--Hb_000960_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.1797 37.3653 32.2457 68.5666 70.815 136.384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.214 158.432 58.3584 101.569 59.8594

CAGE analysis