Hb_010436_020

Information

Type -
Description -
Location Contig10436: 24410-33640
Sequence    

Annotation

kegg
ID pda:103706567
description endoribonuclease Dicer homolog 4-like
nr
ID XP_010100238.1
description Dicer-like protein 4 [Morus notabilis]
swissprot
ID Q1DKI1
description Dicer-like protein 1 OS=Coccidioides immitis (strain RS) GN=DCL1 PE=3 SV=3
trembl
ID W9S141
description Dicer-like protein 4 OS=Morus notabilis GN=L484_005442 PE=4 SV=1
Gene Ontology
ID GO:0003723
description dicer-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01566: 27963-29028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010436_020 0.0 - - Dicer-like protein 4 [Morus notabilis]
2 Hb_049675_010 0.0739487564 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
3 Hb_000122_130 0.0882017151 - - conserved hypothetical protein [Ricinus communis]
4 Hb_034271_030 0.0896214455 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
5 Hb_010436_030 0.094774135 - - Ribonuclease III, putative [Ricinus communis]
6 Hb_001019_060 0.0964507476 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
7 Hb_012490_040 0.1090257613 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
8 Hb_004324_250 0.1192480152 - - PREDICTED: protein IWS1 homolog A isoform X1 [Jatropha curcas]
9 Hb_189118_010 0.121777788 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
10 Hb_007426_030 0.1237925426 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
11 Hb_073171_110 0.1241230256 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
12 Hb_002890_340 0.1246717431 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
13 Hb_000723_260 0.1260493424 - - ethylene insensitive protein, putative [Ricinus communis]
14 Hb_001623_510 0.1263410286 - - transporter, putative [Ricinus communis]
15 Hb_051407_010 0.1273730135 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
16 Hb_027450_010 0.1311300123 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
17 Hb_011794_060 0.1327021289 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_022148_010 0.13400597 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
19 Hb_003195_060 0.1343334698 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
20 Hb_005280_010 0.1346612335 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]

Gene co-expression network

sample Hb_010436_020 Hb_010436_020 Hb_049675_010 Hb_049675_010 Hb_010436_020--Hb_049675_010 Hb_000122_130 Hb_000122_130 Hb_010436_020--Hb_000122_130 Hb_034271_030 Hb_034271_030 Hb_010436_020--Hb_034271_030 Hb_010436_030 Hb_010436_030 Hb_010436_020--Hb_010436_030 Hb_001019_060 Hb_001019_060 Hb_010436_020--Hb_001019_060 Hb_012490_040 Hb_012490_040 Hb_010436_020--Hb_012490_040 Hb_049675_010--Hb_000122_130 Hb_049675_010--Hb_012490_040 Hb_049675_010--Hb_034271_030 Hb_002890_340 Hb_002890_340 Hb_049675_010--Hb_002890_340 Hb_005280_010 Hb_005280_010 Hb_049675_010--Hb_005280_010 Hb_000122_130--Hb_012490_040 Hb_000122_130--Hb_002890_340 Hb_012395_190 Hb_012395_190 Hb_000122_130--Hb_012395_190 Hb_000122_130--Hb_005280_010 Hb_034271_030--Hb_012490_040 Hb_027450_010 Hb_027450_010 Hb_034271_030--Hb_027450_010 Hb_000244_160 Hb_000244_160 Hb_034271_030--Hb_000244_160 Hb_001226_020 Hb_001226_020 Hb_034271_030--Hb_001226_020 Hb_000723_260 Hb_000723_260 Hb_034271_030--Hb_000723_260 Hb_008247_010 Hb_008247_010 Hb_010436_030--Hb_008247_010 Hb_003001_150 Hb_003001_150 Hb_010436_030--Hb_003001_150 Hb_000005_380 Hb_000005_380 Hb_010436_030--Hb_000005_380 Hb_004440_100 Hb_004440_100 Hb_010436_030--Hb_004440_100 Hb_123777_030 Hb_123777_030 Hb_010436_030--Hb_123777_030 Hb_007426_030 Hb_007426_030 Hb_001019_060--Hb_007426_030 Hb_000103_180 Hb_000103_180 Hb_001019_060--Hb_000103_180 Hb_000538_200 Hb_000538_200 Hb_001019_060--Hb_000538_200 Hb_002079_010 Hb_002079_010 Hb_001019_060--Hb_002079_010 Hb_005489_110 Hb_005489_110 Hb_001019_060--Hb_005489_110 Hb_000808_230 Hb_000808_230 Hb_001019_060--Hb_000808_230 Hb_000914_070 Hb_000914_070 Hb_012490_040--Hb_000914_070 Hb_003195_060 Hb_003195_060 Hb_012490_040--Hb_003195_060 Hb_012490_040--Hb_002890_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.88365 0.954472 0.612515 0.972633 5.58697 8.36495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04686 2.66598 6.24783 3.14444 2.58607

CAGE analysis