Hb_010436_030

Information

Type -
Description -
Location Contig10436: 44311-58245
Sequence    

Annotation

kegg
ID rcu:RCOM_0701500
description Ribonuclease III, putative (EC:3.1.26.3)
nr
ID XP_002523532.1
description Ribonuclease III, putative [Ricinus communis]
swissprot
ID P84634
description Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
trembl
ID B9SC13
description Ribonuclease III, putative OS=Ricinus communis GN=RCOM_0701500 PE=4 SV=1
Gene Ontology
ID GO:0003723
description dicer-like protein 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01567: 49134-56921 , PASA_asmbl_01568: 57032-57307 , PASA_asmbl_01569: 57584-58198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010436_030 0.0 - - Ribonuclease III, putative [Ricinus communis]
2 Hb_008247_010 0.0808804909 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_010436_020 0.094774135 - - Dicer-like protein 4 [Morus notabilis]
4 Hb_003001_150 0.099938044 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000005_380 0.1031327248 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
6 Hb_004440_100 0.1071506899 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
7 Hb_123777_030 0.1097540538 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
8 Hb_011316_110 0.1098921846 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
9 Hb_049675_010 0.1140898316 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_000077_130 0.1143052007 - - PREDICTED: callose synthase 12 [Jatropha curcas]
11 Hb_003406_040 0.1158873786 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
12 Hb_000723_260 0.1189492674 - - ethylene insensitive protein, putative [Ricinus communis]
13 Hb_000086_590 0.1192351414 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
14 Hb_002193_010 0.119823947 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
15 Hb_003030_020 0.1203607097 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
16 Hb_000236_250 0.1204803382 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007447_010 0.1244971328 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
18 Hb_002255_070 0.1247737235 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
19 Hb_007586_030 0.1258576706 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
20 Hb_073171_110 0.1265822496 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_010436_030 Hb_010436_030 Hb_008247_010 Hb_008247_010 Hb_010436_030--Hb_008247_010 Hb_010436_020 Hb_010436_020 Hb_010436_030--Hb_010436_020 Hb_003001_150 Hb_003001_150 Hb_010436_030--Hb_003001_150 Hb_000005_380 Hb_000005_380 Hb_010436_030--Hb_000005_380 Hb_004440_100 Hb_004440_100 Hb_010436_030--Hb_004440_100 Hb_123777_030 Hb_123777_030 Hb_010436_030--Hb_123777_030 Hb_033834_010 Hb_033834_010 Hb_008247_010--Hb_033834_010 Hb_004048_090 Hb_004048_090 Hb_008247_010--Hb_004048_090 Hb_008247_010--Hb_003001_150 Hb_000009_210 Hb_000009_210 Hb_008247_010--Hb_000009_210 Hb_003544_100 Hb_003544_100 Hb_008247_010--Hb_003544_100 Hb_049675_010 Hb_049675_010 Hb_010436_020--Hb_049675_010 Hb_000122_130 Hb_000122_130 Hb_010436_020--Hb_000122_130 Hb_034271_030 Hb_034271_030 Hb_010436_020--Hb_034271_030 Hb_001019_060 Hb_001019_060 Hb_010436_020--Hb_001019_060 Hb_012490_040 Hb_012490_040 Hb_010436_020--Hb_012490_040 Hb_003001_150--Hb_003544_100 Hb_002276_060 Hb_002276_060 Hb_003001_150--Hb_002276_060 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_000729_050 Hb_000729_050 Hb_003001_150--Hb_000729_050 Hb_007943_100 Hb_007943_100 Hb_003001_150--Hb_007943_100 Hb_007586_030 Hb_007586_030 Hb_000005_380--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000005_380--Hb_000244_250 Hb_000005_380--Hb_123777_030 Hb_011318_010 Hb_011318_010 Hb_000005_380--Hb_011318_010 Hb_005977_090 Hb_005977_090 Hb_000005_380--Hb_005977_090 Hb_004055_040 Hb_004055_040 Hb_000005_380--Hb_004055_040 Hb_002874_070 Hb_002874_070 Hb_004440_100--Hb_002874_070 Hb_005730_030 Hb_005730_030 Hb_004440_100--Hb_005730_030 Hb_022256_040 Hb_022256_040 Hb_004440_100--Hb_022256_040 Hb_000369_060 Hb_000369_060 Hb_004440_100--Hb_000369_060 Hb_006091_030 Hb_006091_030 Hb_004440_100--Hb_006091_030 Hb_001584_110 Hb_001584_110 Hb_004440_100--Hb_001584_110 Hb_003406_040 Hb_003406_040 Hb_123777_030--Hb_003406_040 Hb_001871_040 Hb_001871_040 Hb_123777_030--Hb_001871_040 Hb_123777_030--Hb_007586_030 Hb_000977_180 Hb_000977_180 Hb_123777_030--Hb_000977_180 Hb_123777_030--Hb_004055_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93709 2.03685 1.82703 1.78353 10.6468 12.0731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88026 2.91048 10.7301 4.36184 5.14164

CAGE analysis