Hb_010436_060

Information

Type -
Description -
Location Contig10436: 68664-72183
Sequence    

Annotation

kegg
ID sbi:SORBI_06g022180
description SORBIDRAFT_06g022180, Sb06g022180; hypothetical protein
nr
ID KDO59383.1
description hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
swissprot
ID Q9LXW7
description Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1 SV=2
trembl
ID A0A067EWB0
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0003801mg PE=4 SV=1
Gene Ontology
ID GO:0003723
description dicer-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01570: 69561-72005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010436_060 0.0 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
2 Hb_006641_010 0.0584006542 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
3 Hb_003964_100 0.0872121319 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
4 Hb_011671_220 0.0883658334 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001235_030 0.0884309633 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
6 Hb_001073_050 0.0886897732 - - -
7 Hb_005117_010 0.0918497105 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
8 Hb_001357_080 0.0918864367 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
9 Hb_154648_010 0.0952794755 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
10 Hb_020000_010 0.0957348746 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
11 Hb_064441_010 0.09590373 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
12 Hb_005092_060 0.1004798955 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
13 Hb_009666_040 0.1008300825 - - glutathione transferase, putative [Ricinus communis]
14 Hb_002759_060 0.1014511393 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
15 Hb_000046_290 0.1017471545 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
16 Hb_000029_020 0.1018264808 - - Vesicle-associated membrane protein, putative [Ricinus communis]
17 Hb_000230_540 0.1034940377 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
18 Hb_001811_020 0.1038772511 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000482_090 0.1041653027 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
20 Hb_000751_130 0.1054364595 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]

Gene co-expression network

sample Hb_010436_060 Hb_010436_060 Hb_006641_010 Hb_006641_010 Hb_010436_060--Hb_006641_010 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_011671_220 Hb_011671_220 Hb_010436_060--Hb_011671_220 Hb_001235_030 Hb_001235_030 Hb_010436_060--Hb_001235_030 Hb_001073_050 Hb_001073_050 Hb_010436_060--Hb_001073_050 Hb_005117_010 Hb_005117_010 Hb_010436_060--Hb_005117_010 Hb_006641_010--Hb_005117_010 Hb_074979_020 Hb_074979_020 Hb_006641_010--Hb_074979_020 Hb_000028_140 Hb_000028_140 Hb_006641_010--Hb_000028_140 Hb_001155_030 Hb_001155_030 Hb_006641_010--Hb_001155_030 Hb_002759_060 Hb_002759_060 Hb_006641_010--Hb_002759_060 Hb_000751_130 Hb_000751_130 Hb_003964_100--Hb_000751_130 Hb_029866_070 Hb_029866_070 Hb_003964_100--Hb_029866_070 Hb_006846_060 Hb_006846_060 Hb_003964_100--Hb_006846_060 Hb_024714_010 Hb_024714_010 Hb_003964_100--Hb_024714_010 Hb_004032_100 Hb_004032_100 Hb_003964_100--Hb_004032_100 Hb_001829_060 Hb_001829_060 Hb_003964_100--Hb_001829_060 Hb_011671_220--Hb_005117_010 Hb_020000_010 Hb_020000_010 Hb_011671_220--Hb_020000_010 Hb_000230_540 Hb_000230_540 Hb_011671_220--Hb_000230_540 Hb_004055_140 Hb_004055_140 Hb_011671_220--Hb_004055_140 Hb_002551_020 Hb_002551_020 Hb_011671_220--Hb_002551_020 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_004056_030 Hb_004056_030 Hb_001073_050--Hb_004056_030 Hb_023292_010 Hb_023292_010 Hb_001073_050--Hb_023292_010 Hb_002603_160 Hb_002603_160 Hb_001073_050--Hb_002603_160 Hb_064441_010 Hb_064441_010 Hb_001073_050--Hb_064441_010 Hb_001357_080 Hb_001357_080 Hb_001073_050--Hb_001357_080 Hb_005117_010--Hb_000230_540 Hb_005117_010--Hb_004055_140 Hb_000914_070 Hb_000914_070 Hb_005117_010--Hb_000914_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.50244 1.41718 1.66828 4.72906 5.71237 14.1644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.788 12.8643 15.9947 6.39696 5.53302

CAGE analysis