Hb_010436_070

Information

Type -
Description -
Location Contig10436: 78792-86065
Sequence    

Annotation

kegg
ID eus:EUTSA_v100124261m
description hypothetical protein
nr
ID XP_009587251.1
description PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
swissprot
ID Q9M8N2
description Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana GN=RTL1 PE=2 SV=1
trembl
ID K7TUS4
description Uncharacterized protein OS=Zea mays GN=LOC100381550 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dicer-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01572: 84332-85808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010436_070 0.0 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
2 Hb_125000_010 0.0461243402 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
3 Hb_118419_020 0.0556274222 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
4 Hb_000832_140 0.0639021302 - - actin depolymerizing factor 4 [Hevea brasiliensis]
5 Hb_009711_030 0.0670212112 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
6 Hb_002097_110 0.0696633715 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000172_370 0.0704394963 - - -
8 Hb_001776_110 0.0708243151 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
9 Hb_063716_050 0.0725451311 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
10 Hb_148912_010 0.0741416258 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007426_230 0.076415143 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
12 Hb_001604_080 0.076545149 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
13 Hb_000529_190 0.0771652175 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
14 Hb_000703_140 0.0777968484 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
15 Hb_029510_140 0.0781751892 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
16 Hb_000103_560 0.0789865081 - - ADP-ribosylation factor, putative [Ricinus communis]
17 Hb_003540_040 0.0790213899 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
18 Hb_004195_160 0.079092729 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
19 Hb_009767_120 0.0792854161 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
20 Hb_004440_090 0.0793411091 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_010436_070 Hb_010436_070 Hb_125000_010 Hb_125000_010 Hb_010436_070--Hb_125000_010 Hb_118419_020 Hb_118419_020 Hb_010436_070--Hb_118419_020 Hb_000832_140 Hb_000832_140 Hb_010436_070--Hb_000832_140 Hb_009711_030 Hb_009711_030 Hb_010436_070--Hb_009711_030 Hb_002097_110 Hb_002097_110 Hb_010436_070--Hb_002097_110 Hb_000172_370 Hb_000172_370 Hb_010436_070--Hb_000172_370 Hb_125000_010--Hb_009711_030 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_125000_010--Hb_118419_020 Hb_002411_170 Hb_002411_170 Hb_125000_010--Hb_002411_170 Hb_022250_040 Hb_022250_040 Hb_125000_010--Hb_022250_040 Hb_000317_430 Hb_000317_430 Hb_118419_020--Hb_000317_430 Hb_000175_070 Hb_000175_070 Hb_118419_020--Hb_000175_070 Hb_118419_020--Hb_002097_110 Hb_007193_100 Hb_007193_100 Hb_118419_020--Hb_007193_100 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_002214_040 Hb_002214_040 Hb_000832_140--Hb_002214_040 Hb_003050_080 Hb_003050_080 Hb_000832_140--Hb_003050_080 Hb_000103_560 Hb_000103_560 Hb_000832_140--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_000832_140--Hb_063716_050 Hb_000529_190 Hb_000529_190 Hb_000832_140--Hb_000529_190 Hb_009711_030--Hb_022250_040 Hb_000371_080 Hb_000371_080 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_001824_070 Hb_001824_070 Hb_009711_030--Hb_001824_070 Hb_009711_030--Hb_002097_110 Hb_004662_030 Hb_004662_030 Hb_002097_110--Hb_004662_030 Hb_015001_020 Hb_015001_020 Hb_002097_110--Hb_015001_020 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_002097_110--Hb_001824_070 Hb_148912_010 Hb_148912_010 Hb_000172_370--Hb_148912_010 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0739 4.11891 6.14417 10.0852 23.0234 27.7358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2559 31.2625 19.5356 8.84683 7.05889

CAGE analysis