Hb_010436_080

Information

Type -
Description -
Location Contig10436: 92044-105816
Sequence    

Annotation

kegg
ID rcu:RCOM_0701490
description DNA replication licensing factor MCM5, putative
nr
ID XP_012071446.1
description PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
swissprot
ID O80786
description DNA replication licensing factor MCM5 OS=Arabidopsis thaliana GN=MCM5 PE=1 SV=1
trembl
ID A0A067KR63
description DNA helicase OS=Jatropha curcas GN=JCGZ_03985 PE=3 SV=1
Gene Ontology
ID GO:0005634
description at2g07360-like partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010436_080 0.0 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
2 Hb_000190_220 0.1218019443 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
3 Hb_000003_060 0.128253284 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
4 Hb_004968_040 0.1304151225 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
5 Hb_002078_230 0.1334609396 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
6 Hb_009339_040 0.1456938626 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006970_130 0.1476510135 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
8 Hb_002311_090 0.1518795567 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
9 Hb_000288_090 0.1530036236 - - unnamed protein product [Vitis vinifera]
10 Hb_004007_130 0.1590294795 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
11 Hb_000034_150 0.1617618817 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
12 Hb_000175_300 0.162562825 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
13 Hb_000365_210 0.1648478183 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
14 Hb_124677_050 0.166926402 - - conserved hypothetical protein [Ricinus communis]
15 Hb_013344_010 0.1673318577 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
16 Hb_001780_080 0.1679945816 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
17 Hb_000139_280 0.1683460806 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
18 Hb_005271_140 0.1745039904 transcription factor TF Family: LIM Pollen-specific protein SF3 [Morus notabilis]
19 Hb_093458_020 0.1745737646 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
20 Hb_000956_050 0.1773388977 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010436_080 Hb_010436_080 Hb_000190_220 Hb_000190_220 Hb_010436_080--Hb_000190_220 Hb_000003_060 Hb_000003_060 Hb_010436_080--Hb_000003_060 Hb_004968_040 Hb_004968_040 Hb_010436_080--Hb_004968_040 Hb_002078_230 Hb_002078_230 Hb_010436_080--Hb_002078_230 Hb_009339_040 Hb_009339_040 Hb_010436_080--Hb_009339_040 Hb_006970_130 Hb_006970_130 Hb_010436_080--Hb_006970_130 Hb_000956_050 Hb_000956_050 Hb_000190_220--Hb_000956_050 Hb_000139_280 Hb_000139_280 Hb_000190_220--Hb_000139_280 Hb_002311_090 Hb_002311_090 Hb_000190_220--Hb_002311_090 Hb_007943_180 Hb_007943_180 Hb_000190_220--Hb_007943_180 Hb_000190_220--Hb_006970_130 Hb_093458_020 Hb_093458_020 Hb_000003_060--Hb_093458_020 Hb_000003_060--Hb_004968_040 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_000077_110 Hb_000077_110 Hb_004968_040--Hb_000077_110 Hb_004968_040--Hb_093458_020 Hb_002284_260 Hb_002284_260 Hb_004968_040--Hb_002284_260 Hb_004968_040--Hb_006970_130 Hb_000260_610 Hb_000260_610 Hb_002078_230--Hb_000260_610 Hb_002078_230--Hb_009339_040 Hb_002078_230--Hb_000288_090 Hb_007545_110 Hb_007545_110 Hb_002078_230--Hb_007545_110 Hb_000181_270 Hb_000181_270 Hb_002078_230--Hb_000181_270 Hb_000343_020 Hb_000343_020 Hb_009339_040--Hb_000343_020 Hb_011849_030 Hb_011849_030 Hb_009339_040--Hb_011849_030 Hb_004007_130 Hb_004007_130 Hb_009339_040--Hb_004007_130 Hb_009339_040--Hb_002311_090 Hb_027337_010 Hb_027337_010 Hb_009339_040--Hb_027337_010 Hb_024682_030 Hb_024682_030 Hb_009339_040--Hb_024682_030 Hb_005271_140 Hb_005271_140 Hb_006970_130--Hb_005271_140 Hb_006970_130--Hb_000288_090 Hb_006970_130--Hb_004007_130 Hb_004531_080 Hb_004531_080 Hb_006970_130--Hb_004531_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0114742 0.0733469 0.562534 0.315119 0.0173305 0.00809803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0420575 0.0496392 0 0.0986855 0.035032

CAGE analysis