Hb_010449_020

Information

Type -
Description -
Location Contig10449: 25807-28908
Sequence    

Annotation

kegg
ID rcu:RCOM_0657470
description rRNA-processing protein UTP23, putative
nr
ID XP_012066270.1
description PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
swissprot
ID Q9BRU9
description rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2
trembl
ID A0A067L6N2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23835 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01577: 25891-29008
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010449_020 0.0 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
2 Hb_003185_020 0.0639444509 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
3 Hb_000392_270 0.071315042 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
4 Hb_000768_050 0.0729641156 - - hypothetical protein RCOM_0845740 [Ricinus communis]
5 Hb_003688_100 0.0751425701 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
6 Hb_005489_130 0.0767148902 - - calmodulin, putative [Ricinus communis]
7 Hb_004722_060 0.0777569947 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
8 Hb_002762_060 0.0814083448 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
9 Hb_001514_020 0.0830399328 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
10 Hb_002272_250 0.0836550015 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_004204_030 0.0865228672 - - unknown [Populus trichocarpa]
12 Hb_002495_070 0.0872587844 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
13 Hb_027892_060 0.0885407012 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
14 Hb_001369_650 0.0890404607 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
15 Hb_004012_010 0.0910277465 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
16 Hb_000265_150 0.0922103384 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
17 Hb_000732_260 0.0923221818 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
18 Hb_024835_030 0.0923356033 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
19 Hb_143766_090 0.0931860868 - - 60S ribosomal protein L31B [Hevea brasiliensis]
20 Hb_006775_080 0.0934655879 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]

Gene co-expression network

sample Hb_010449_020 Hb_010449_020 Hb_003185_020 Hb_003185_020 Hb_010449_020--Hb_003185_020 Hb_000392_270 Hb_000392_270 Hb_010449_020--Hb_000392_270 Hb_000768_050 Hb_000768_050 Hb_010449_020--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_010449_020--Hb_003688_100 Hb_005489_130 Hb_005489_130 Hb_010449_020--Hb_005489_130 Hb_004722_060 Hb_004722_060 Hb_010449_020--Hb_004722_060 Hb_004012_010 Hb_004012_010 Hb_003185_020--Hb_004012_010 Hb_157854_010 Hb_157854_010 Hb_003185_020--Hb_157854_010 Hb_002762_060 Hb_002762_060 Hb_003185_020--Hb_002762_060 Hb_003185_020--Hb_000392_270 Hb_003185_020--Hb_004722_060 Hb_000977_080 Hb_000977_080 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_011360_140 Hb_011360_140 Hb_000392_270--Hb_011360_140 Hb_002495_070 Hb_002495_070 Hb_000768_050--Hb_002495_070 Hb_003106_070 Hb_003106_070 Hb_000768_050--Hb_003106_070 Hb_000265_150 Hb_000265_150 Hb_000768_050--Hb_000265_150 Hb_000768_050--Hb_003688_100 Hb_000768_050--Hb_004722_060 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_003688_100--Hb_004722_060 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_003688_100--Hb_005489_130 Hb_000045_130 Hb_000045_130 Hb_005489_130--Hb_000045_130 Hb_005489_130--Hb_004722_060 Hb_000808_040 Hb_000808_040 Hb_005489_130--Hb_000808_040 Hb_159558_030 Hb_159558_030 Hb_005489_130--Hb_159558_030 Hb_019962_030 Hb_019962_030 Hb_004722_060--Hb_019962_030 Hb_004722_060--Hb_000265_150 Hb_000538_020 Hb_000538_020 Hb_004722_060--Hb_000538_020 Hb_004722_060--Hb_002495_070 Hb_000621_080 Hb_000621_080 Hb_004722_060--Hb_000621_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.6114 21.6131 15.0112 7.81855 46.9853 51.5222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.8605 58.8037 26.787 14.6727 6.72227

CAGE analysis