Hb_010449_040

Information

Type -
Description -
Location Contig10449: 65329-70671
Sequence    

Annotation

kegg
ID rcu:RCOM_0846690
description phosphatidylinositol synthase, putative (EC:2.7.8.11)
nr
ID XP_012081784.1
description PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
swissprot
ID Q8LBA6
description CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 OS=Arabidopsis thaliana GN=PIS1 PE=1 SV=2
trembl
ID A0A067K0J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18829 PE=3 SV=1
Gene Ontology
ID GO:0016740
description probable cdp-diacylglycerol--inositol 3-phosphatidyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010449_040 0.0 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
2 Hb_009372_030 0.1383289726 - - 50S ribosomal protein L6, putative [Ricinus communis]
3 Hb_001638_240 0.145282229 - - PREDICTED: uncharacterized protein LOC100262493 [Vitis vinifera]
4 Hb_000224_120 0.1469476666 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
5 Hb_007100_030 0.1487788586 - - 40S ribosomal protein S17B [Hevea brasiliensis]
6 Hb_029866_070 0.1518969621 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
7 Hb_005588_070 0.1526933692 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
8 Hb_124755_010 0.1534986187 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
9 Hb_000297_040 0.1539342808 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
10 Hb_002539_090 0.154675453 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
11 Hb_076175_010 0.154758835 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Cucumis melo]
12 Hb_000313_010 0.1552996626 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_004659_060 0.1558245406 - - RAS-related GTP-binding family protein [Populus trichocarpa]
14 Hb_002217_450 0.1559783322 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
15 Hb_021409_090 0.157580716 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
16 Hb_005235_030 0.1578158382 - - PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
17 Hb_000963_180 0.1578853757 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
18 Hb_000127_120 0.1599323643 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003561_030 0.1602603551 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
20 Hb_004374_140 0.1622660812 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]

Gene co-expression network

sample Hb_010449_040 Hb_010449_040 Hb_009372_030 Hb_009372_030 Hb_010449_040--Hb_009372_030 Hb_001638_240 Hb_001638_240 Hb_010449_040--Hb_001638_240 Hb_000224_120 Hb_000224_120 Hb_010449_040--Hb_000224_120 Hb_007100_030 Hb_007100_030 Hb_010449_040--Hb_007100_030 Hb_029866_070 Hb_029866_070 Hb_010449_040--Hb_029866_070 Hb_005588_070 Hb_005588_070 Hb_010449_040--Hb_005588_070 Hb_076175_010 Hb_076175_010 Hb_009372_030--Hb_076175_010 Hb_001935_150 Hb_001935_150 Hb_009372_030--Hb_001935_150 Hb_002025_300 Hb_002025_300 Hb_009372_030--Hb_002025_300 Hb_009372_030--Hb_001638_240 Hb_004659_060 Hb_004659_060 Hb_009372_030--Hb_004659_060 Hb_003663_070 Hb_003663_070 Hb_001638_240--Hb_003663_070 Hb_001638_240--Hb_001935_150 Hb_001638_240--Hb_004659_060 Hb_002843_210 Hb_002843_210 Hb_001638_240--Hb_002843_210 Hb_001638_240--Hb_005588_070 Hb_000672_120 Hb_000672_120 Hb_001638_240--Hb_000672_120 Hb_011457_090 Hb_011457_090 Hb_000224_120--Hb_011457_090 Hb_004336_050 Hb_004336_050 Hb_000224_120--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000224_120--Hb_000975_110 Hb_004374_140 Hb_004374_140 Hb_000224_120--Hb_004374_140 Hb_001307_090 Hb_001307_090 Hb_000224_120--Hb_001307_090 Hb_000963_180 Hb_000963_180 Hb_000224_120--Hb_000963_180 Hb_001842_040 Hb_001842_040 Hb_007100_030--Hb_001842_040 Hb_000441_190 Hb_000441_190 Hb_007100_030--Hb_000441_190 Hb_007100_030--Hb_000963_180 Hb_001141_030 Hb_001141_030 Hb_007100_030--Hb_001141_030 Hb_138585_060 Hb_138585_060 Hb_007100_030--Hb_138585_060 Hb_003203_040 Hb_003203_040 Hb_007100_030--Hb_003203_040 Hb_029866_070--Hb_000963_180 Hb_003964_100 Hb_003964_100 Hb_029866_070--Hb_003964_100 Hb_008300_010 Hb_008300_010 Hb_029866_070--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_029866_070--Hb_001461_010 Hb_010174_020 Hb_010174_020 Hb_029866_070--Hb_010174_020 Hb_000152_550 Hb_000152_550 Hb_029866_070--Hb_000152_550 Hb_005588_070--Hb_004336_050 Hb_012675_070 Hb_012675_070 Hb_005588_070--Hb_012675_070 Hb_180301_010 Hb_180301_010 Hb_005588_070--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_005588_070--Hb_001504_080 Hb_005588_070--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_005588_070--Hb_002878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11817 0.0219221 0.120474 0.694652 0.408905 0.793677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.601978 1.60951 1.20786 0.343925 0.191611

CAGE analysis