Hb_010452_010

Information

Type -
Description -
Location Contig10452: 11170-11865
Sequence    

Annotation

kegg
ID sot:102584707
description uncharacterized LOC102584707
nr
ID XP_009783861.1
description PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A087G249
description Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs43383U000100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010452_010 0.0 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
2 Hb_015778_020 0.0500309179 - - Putative methyltransferase family protein [Solanum demissum]
3 Hb_015076_020 0.1817347032 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
4 Hb_056095_010 0.227377492 - - conserved hypothetical protein [Ricinus communis]
5 Hb_083663_010 0.2386814855 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_004241_030 0.2631674644 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000505_120 0.2632112662 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_002520_010 0.2750215315 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_008783_010 0.2769157187 - - -
10 Hb_061940_010 0.2806793778 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
11 Hb_012807_090 0.2836099064 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
12 Hb_004951_050 0.2843533358 - - conserved hypothetical protein [Ricinus communis]
13 Hb_014929_010 0.2847853996 - - -
14 Hb_000143_070 0.2858870153 - - -
15 Hb_000300_460 0.2869394948 - - Mavicyanin, putative [Ricinus communis]
16 Hb_003279_010 0.2874953058 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_121954_010 0.2875433895 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
18 Hb_074822_010 0.2875571764 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
19 Hb_005379_010 0.2878779149 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000646_030 0.2879761366 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_010452_010 Hb_010452_010 Hb_015778_020 Hb_015778_020 Hb_010452_010--Hb_015778_020 Hb_015076_020 Hb_015076_020 Hb_010452_010--Hb_015076_020 Hb_056095_010 Hb_056095_010 Hb_010452_010--Hb_056095_010 Hb_083663_010 Hb_083663_010 Hb_010452_010--Hb_083663_010 Hb_004241_030 Hb_004241_030 Hb_010452_010--Hb_004241_030 Hb_000505_120 Hb_000505_120 Hb_010452_010--Hb_000505_120 Hb_015778_020--Hb_015076_020 Hb_015778_020--Hb_083663_010 Hb_002520_010 Hb_002520_010 Hb_015778_020--Hb_002520_010 Hb_015778_020--Hb_000505_120 Hb_015778_020--Hb_056095_010 Hb_015076_020--Hb_000505_120 Hb_008783_010 Hb_008783_010 Hb_015076_020--Hb_008783_010 Hb_011280_020 Hb_011280_020 Hb_015076_020--Hb_011280_020 Hb_015076_020--Hb_004241_030 Hb_061940_010 Hb_061940_010 Hb_056095_010--Hb_061940_010 Hb_158203_010 Hb_158203_010 Hb_056095_010--Hb_158203_010 Hb_152483_010 Hb_152483_010 Hb_056095_010--Hb_152483_010 Hb_000710_100 Hb_000710_100 Hb_056095_010--Hb_000710_100 Hb_041711_040 Hb_041711_040 Hb_056095_010--Hb_041711_040 Hb_010623_010 Hb_010623_010 Hb_056095_010--Hb_010623_010 Hb_083663_010--Hb_011280_020 Hb_011344_150 Hb_011344_150 Hb_083663_010--Hb_011344_150 Hb_083663_010--Hb_002520_010 Hb_083663_010--Hb_000505_120 Hb_000574_140 Hb_000574_140 Hb_004241_030--Hb_000574_140 Hb_004241_030--Hb_000505_120 Hb_004687_010 Hb_004687_010 Hb_004241_030--Hb_004687_010 Hb_004241_030--Hb_011280_020 Hb_004241_030--Hb_008783_010 Hb_000505_120--Hb_011280_020 Hb_000505_120--Hb_008783_010 Hb_003413_010 Hb_003413_010 Hb_000505_120--Hb_003413_010 Hb_097006_010 Hb_097006_010 Hb_000505_120--Hb_097006_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116428 0.077855 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.322093

CAGE analysis