Hb_010452_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig10452: 45469-46646
Sequence    

Annotation

kegg
ID tcc:TCM_025488
description Myb domain protein 107
nr
ID XP_007029608.1
description Myb domain protein 107 [Theobroma cacao]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID A0A061EYD8
description Myb domain protein 107 OS=Theobroma cacao GN=TCM_025488 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor myb39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010452_030 0.0 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
2 Hb_001100_020 0.0013179949 - - -
3 Hb_000045_270 0.0026923404 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002400_110 0.006499268 - - conserved hypothetical protein [Ricinus communis]
5 Hb_072149_010 0.0067413932 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
6 Hb_122911_010 0.0083791505 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
7 Hb_004944_030 0.0084396778 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_001136_140 0.0092925224 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
9 Hb_002342_040 0.0155823022 - - FERONIA, partial [Arabis alpina]
10 Hb_005426_010 0.025966641 - - polyprotein [Oryza australiensis]
11 Hb_007592_010 0.0261207816 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
12 Hb_187024_020 0.0265056209 - - PREDICTED: uncharacterized protein LOC102598429 [Solanum tuberosum]
13 Hb_008092_010 0.0282666441 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
14 Hb_003702_020 0.0287103501 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
15 Hb_000370_050 0.0287458696 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_188168_010 0.0297569992 - - Arylacetamide deacetylase, putative [Ricinus communis]
17 Hb_039814_010 0.030104796 - - hypothetical protein JCGZ_05023 [Jatropha curcas]
18 Hb_042239_010 0.0330222048 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
19 Hb_048653_010 0.034284213 - - PREDICTED: mavicyanin [Jatropha curcas]
20 Hb_013654_020 0.0344264116 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]

Gene co-expression network

sample Hb_010452_030 Hb_010452_030 Hb_001100_020 Hb_001100_020 Hb_010452_030--Hb_001100_020 Hb_000045_270 Hb_000045_270 Hb_010452_030--Hb_000045_270 Hb_002400_110 Hb_002400_110 Hb_010452_030--Hb_002400_110 Hb_072149_010 Hb_072149_010 Hb_010452_030--Hb_072149_010 Hb_122911_010 Hb_122911_010 Hb_010452_030--Hb_122911_010 Hb_004944_030 Hb_004944_030 Hb_010452_030--Hb_004944_030 Hb_001100_020--Hb_000045_270 Hb_001100_020--Hb_002400_110 Hb_001100_020--Hb_072149_010 Hb_001100_020--Hb_004944_030 Hb_001136_140 Hb_001136_140 Hb_001100_020--Hb_001136_140 Hb_000045_270--Hb_122911_010 Hb_000045_270--Hb_002400_110 Hb_000045_270--Hb_072149_010 Hb_000045_270--Hb_004944_030 Hb_002400_110--Hb_072149_010 Hb_002400_110--Hb_004944_030 Hb_002400_110--Hb_001136_140 Hb_072149_010--Hb_004944_030 Hb_072149_010--Hb_001136_140 Hb_002342_040 Hb_002342_040 Hb_122911_010--Hb_002342_040 Hb_122911_010--Hb_001100_020 Hb_122911_010--Hb_002400_110 Hb_122911_010--Hb_072149_010 Hb_004944_030--Hb_001136_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0772821 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0291024 0

CAGE analysis