Hb_010457_030

Information

Type -
Description -
Location Contig10457: 34057-35199
Sequence    

Annotation

kegg
ID rcu:RCOM_0231800
description APO protein 4, mitochondrial precursor, putative
nr
ID XP_002527241.1
description APO protein 4, mitochondrial precursor, putative [Ricinus communis]
swissprot
ID Q9LSZ0
description APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2
trembl
ID B9SMM2
description APO protein 4, mitochondrial, putative OS=Ricinus communis GN=RCOM_0231800 PE=4 SV=1
Gene Ontology
ID GO:0003723
description apo protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01592: 33858-34229 , PASA_asmbl_01594: 34737-35606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010457_030 0.0 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
2 Hb_000010_330 0.0422719108 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
3 Hb_048937_040 0.0489594473 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
4 Hb_019280_040 0.051396546 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_007904_200 0.0541802457 - - protein binding protein, putative [Ricinus communis]
6 Hb_000365_390 0.0567844153 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
7 Hb_003175_010 0.0593632448 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
8 Hb_010139_040 0.0612208757 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_003665_060 0.0668563145 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
10 Hb_002835_080 0.0689758563 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
11 Hb_000808_270 0.0709758285 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
12 Hb_001248_060 0.0709950851 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007317_110 0.0711678051 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
14 Hb_003195_070 0.0733900147 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_143629_210 0.0742904727 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
16 Hb_001047_030 0.0748920685 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
17 Hb_004221_020 0.0753009355 - - protein binding protein, putative [Ricinus communis]
18 Hb_000125_130 0.0753159246 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
19 Hb_003766_040 0.0753514107 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003417_020 0.0755170607 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_010457_030 Hb_010457_030 Hb_000010_330 Hb_000010_330 Hb_010457_030--Hb_000010_330 Hb_048937_040 Hb_048937_040 Hb_010457_030--Hb_048937_040 Hb_019280_040 Hb_019280_040 Hb_010457_030--Hb_019280_040 Hb_007904_200 Hb_007904_200 Hb_010457_030--Hb_007904_200 Hb_000365_390 Hb_000365_390 Hb_010457_030--Hb_000365_390 Hb_003175_010 Hb_003175_010 Hb_010457_030--Hb_003175_010 Hb_000010_330--Hb_007904_200 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_000010_330--Hb_048937_040 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_010139_040 Hb_010139_040 Hb_048937_040--Hb_010139_040 Hb_019280_040--Hb_003175_010 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_019280_040--Hb_002200_080 Hb_003417_020 Hb_003417_020 Hb_019280_040--Hb_003417_020 Hb_000451_010 Hb_000451_010 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_000365_390--Hb_000010_330 Hb_000365_390--Hb_000125_130 Hb_000365_390--Hb_007904_200 Hb_001638_170 Hb_001638_170 Hb_000365_390--Hb_001638_170 Hb_148644_010 Hb_148644_010 Hb_000365_390--Hb_148644_010 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87276 2.16522 2.06654 2.79493 3.50472 5.30931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.34467 3.64709 3.91635 2.2754 1.75762

CAGE analysis