Hb_010480_030

Information

Type -
Description -
Location Contig10480: 53170-62361
Sequence    

Annotation

kegg
ID tcc:TCM_019795
description LETM1 and EF-hand domain-containing protein 1
nr
ID XP_012075377.1
description PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
swissprot
ID Q5ZK33
description LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1
trembl
ID A0A067KG66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10661 PE=4 SV=1
Gene Ontology
ID GO:0005739
description letm1 and ef-hand domain-containing protein mitochondrial-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01645: 53298-56402 , PASA_asmbl_01646: 56411-57152 , PASA_asmbl_01647: 60585-60885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010480_030 0.0 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
2 Hb_001789_080 0.1224839902 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
3 Hb_006114_010 0.127278769 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
4 Hb_001500_040 0.1356370291 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_003893_010 0.1360546246 - - hypothetical protein M569_16374 [Genlisea aurea]
6 Hb_000340_390 0.1436195098 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
7 Hb_000635_220 0.1438677799 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
8 Hb_001619_070 0.1447320905 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
9 Hb_004452_010 0.146409122 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
10 Hb_004705_140 0.1464952577 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
11 Hb_000805_020 0.1466420988 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
12 Hb_001454_190 0.1498449737 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
13 Hb_000556_160 0.1510604139 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
14 Hb_001969_090 0.1516433163 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
15 Hb_000130_040 0.1519076715 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
16 Hb_077562_030 0.1534370963 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
17 Hb_015175_020 0.1534816625 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
18 Hb_000252_170 0.1557592429 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
19 Hb_000343_130 0.1562244083 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
20 Hb_002835_100 0.1563045464 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_010480_030 Hb_010480_030 Hb_001789_080 Hb_001789_080 Hb_010480_030--Hb_001789_080 Hb_006114_010 Hb_006114_010 Hb_010480_030--Hb_006114_010 Hb_001500_040 Hb_001500_040 Hb_010480_030--Hb_001500_040 Hb_003893_010 Hb_003893_010 Hb_010480_030--Hb_003893_010 Hb_000340_390 Hb_000340_390 Hb_010480_030--Hb_000340_390 Hb_000635_220 Hb_000635_220 Hb_010480_030--Hb_000635_220 Hb_015292_030 Hb_015292_030 Hb_001789_080--Hb_015292_030 Hb_000203_160 Hb_000203_160 Hb_001789_080--Hb_000203_160 Hb_011218_040 Hb_011218_040 Hb_001789_080--Hb_011218_040 Hb_012022_030 Hb_012022_030 Hb_001789_080--Hb_012022_030 Hb_002216_040 Hb_002216_040 Hb_001789_080--Hb_002216_040 Hb_039946_020 Hb_039946_020 Hb_001789_080--Hb_039946_020 Hb_000120_470 Hb_000120_470 Hb_006114_010--Hb_000120_470 Hb_010883_090 Hb_010883_090 Hb_006114_010--Hb_010883_090 Hb_005539_280 Hb_005539_280 Hb_006114_010--Hb_005539_280 Hb_086639_030 Hb_086639_030 Hb_006114_010--Hb_086639_030 Hb_000805_020 Hb_000805_020 Hb_006114_010--Hb_000805_020 Hb_000976_170 Hb_000976_170 Hb_006114_010--Hb_000976_170 Hb_006400_060 Hb_006400_060 Hb_001500_040--Hb_006400_060 Hb_001269_550 Hb_001269_550 Hb_001500_040--Hb_001269_550 Hb_001959_210 Hb_001959_210 Hb_001500_040--Hb_001959_210 Hb_002016_110 Hb_002016_110 Hb_001500_040--Hb_002016_110 Hb_000483_200 Hb_000483_200 Hb_001500_040--Hb_000483_200 Hb_006915_050 Hb_006915_050 Hb_001500_040--Hb_006915_050 Hb_003893_010--Hb_001959_210 Hb_000189_640 Hb_000189_640 Hb_003893_010--Hb_000189_640 Hb_000200_050 Hb_000200_050 Hb_003893_010--Hb_000200_050 Hb_003893_010--Hb_000483_200 Hb_003893_010--Hb_001500_040 Hb_000602_010 Hb_000602_010 Hb_003893_010--Hb_000602_010 Hb_000367_060 Hb_000367_060 Hb_000340_390--Hb_000367_060 Hb_001454_190 Hb_001454_190 Hb_000340_390--Hb_001454_190 Hb_003687_240 Hb_003687_240 Hb_000340_390--Hb_003687_240 Hb_001959_190 Hb_001959_190 Hb_000340_390--Hb_001959_190 Hb_004607_050 Hb_004607_050 Hb_000340_390--Hb_004607_050 Hb_001811_030 Hb_001811_030 Hb_000340_390--Hb_001811_030 Hb_003687_100 Hb_003687_100 Hb_000635_220--Hb_003687_100 Hb_000343_130 Hb_000343_130 Hb_000635_220--Hb_000343_130 Hb_163145_020 Hb_163145_020 Hb_000635_220--Hb_163145_020 Hb_007747_200 Hb_007747_200 Hb_000635_220--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000635_220--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_000635_220--Hb_006846_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41353 5.79723 1.53157 1.85626 6.98786 7.8436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.90129 10.216 13.9235 16.9653 4.71776

CAGE analysis