Hb_010483_020

Information

Type -
Description -
Location Contig10483: 34732-37764
Sequence    

Annotation

kegg
ID tcc:TCM_000569
description Phospholipase A 2A, IIA,PLA2A
nr
ID CAA11041.1
description latex allergen [Hevea brasiliensis]
swissprot
ID O48723
description Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1
trembl
ID O65811
description Patatin OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01653: 34964-37753 , PASA_asmbl_01654: 35068-37710
cDNA
(Sanger)
(ID:Location)		 005_J14.ab1: 37426-37710 , 016_I08.ab1: 34964-37000 , 020_A01.ab1: 34964-36916 , 033_M02.ab1: 34964-36910 , 053_G13.ab1: 34964-36938

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010483_020 0.0 - - latex allergen [Hevea brasiliensis]
2 Hb_001205_090 0.1021491872 - - PREDICTED: random slug protein 5 [Jatropha curcas]
3 Hb_007766_010 0.1037792481 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
4 Hb_000481_020 0.1148487997 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
5 Hb_004659_120 0.1220929968 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
6 Hb_001696_030 0.1275878663 - - cytochrome P450, putative [Ricinus communis]
7 Hb_001922_190 0.1302247339 - - RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor [Hevea brasiliensis]
8 Hb_002875_080 0.1380945864 - - protein with unknown function [Ricinus communis]
9 Hb_005918_040 0.1399940969 - - hypothetical protein POPTR_0003s04560g [Populus trichocarpa]
10 Hb_007919_050 0.1419769512 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]
11 Hb_006501_110 0.1458214569 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
12 Hb_001439_120 0.148985371 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006070_010 0.1541351187 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
14 Hb_000389_060 0.1542617915 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
15 Hb_008453_060 0.1548026504 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004724_040 0.1555345164 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
17 Hb_003777_180 0.158138206 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
18 Hb_006132_060 0.1582360847 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
19 Hb_000982_070 0.1596038052 - - unnamed protein product [Vitis vinifera]
20 Hb_000258_430 0.1598511012 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010483_020 Hb_010483_020 Hb_001205_090 Hb_001205_090 Hb_010483_020--Hb_001205_090 Hb_007766_010 Hb_007766_010 Hb_010483_020--Hb_007766_010 Hb_000481_020 Hb_000481_020 Hb_010483_020--Hb_000481_020 Hb_004659_120 Hb_004659_120 Hb_010483_020--Hb_004659_120 Hb_001696_030 Hb_001696_030 Hb_010483_020--Hb_001696_030 Hb_001922_190 Hb_001922_190 Hb_010483_020--Hb_001922_190 Hb_001205_090--Hb_004659_120 Hb_001205_090--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_001205_090--Hb_023988_020 Hb_001017_090 Hb_001017_090 Hb_001205_090--Hb_001017_090 Hb_001205_090--Hb_007766_010 Hb_004724_040 Hb_004724_040 Hb_007766_010--Hb_004724_040 Hb_006070_010 Hb_006070_010 Hb_007766_010--Hb_006070_010 Hb_007766_010--Hb_000481_020 Hb_000258_430 Hb_000258_430 Hb_007766_010--Hb_000258_430 Hb_007766_010--Hb_001696_030 Hb_003777_180 Hb_003777_180 Hb_000481_020--Hb_003777_180 Hb_000184_040 Hb_000184_040 Hb_000481_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000481_020--Hb_006120_200 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_004659_120--Hb_000184_040 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_006831_010 Hb_006831_010 Hb_004659_120--Hb_006831_010 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_010174_120 Hb_010174_120 Hb_004659_120--Hb_010174_120 Hb_005167_040 Hb_005167_040 Hb_001696_030--Hb_005167_040 Hb_001696_030--Hb_023988_020 Hb_001696_030--Hb_004659_120 Hb_000376_110 Hb_000376_110 Hb_001696_030--Hb_000376_110 Hb_002875_080 Hb_002875_080 Hb_001922_190--Hb_002875_080 Hb_001922_190--Hb_000481_020 Hb_000982_070 Hb_000982_070 Hb_001922_190--Hb_000982_070 Hb_005433_040 Hb_005433_040 Hb_001922_190--Hb_005433_040 Hb_001700_030 Hb_001700_030 Hb_001922_190--Hb_001700_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
690.565 37.5284 38.9764 435.727 565.977 384.066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
773.37 483.688 574.424 45.4398 42.122

CAGE analysis