Hb_010488_010

Information

Type -
Description -
Location Contig10488: 1285-3435
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15840g
description POPTRDRAFT_644424; short-chain dehydrogenase/reductase family protein
nr
ID XP_012083439.1
description PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
swissprot
ID Q9M2E2
description (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1
trembl
ID A0A067JXP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14433 PE=3 SV=1
Gene Ontology
ID GO:0004090
description (+)-neomenthol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01662: 1323-3367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010488_010 0.0 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
2 Hb_001437_120 0.1110622138 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
3 Hb_002495_060 0.1179718747 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_028707_110 0.1243461804 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
5 Hb_002276_070 0.1244086644 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
6 Hb_001408_030 0.136597991 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
7 Hb_008092_050 0.1454936962 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
8 Hb_000023_370 0.153772732 - - -
9 Hb_003929_220 0.1562524902 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003900_030 0.1580433835 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
11 Hb_000281_070 0.1627404688 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
12 Hb_002942_130 0.1632352951 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
13 Hb_005618_150 0.1673262719 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
14 Hb_008092_060 0.1699207667 - - -
15 Hb_002368_070 0.170846092 - - PREDICTED: uncharacterized protein LOC105634087 [Jatropha curcas]
16 Hb_006911_070 0.1714006192 - - 50S ribosomal protein L1p, putative [Ricinus communis]
17 Hb_001307_040 0.1722186753 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
18 Hb_004254_100 0.1733445546 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
19 Hb_006052_030 0.1735850932 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
20 Hb_001907_070 0.174658898 - - 50S ribosomal protein L1p, putative [Ricinus communis]

Gene co-expression network

sample Hb_010488_010 Hb_010488_010 Hb_001437_120 Hb_001437_120 Hb_010488_010--Hb_001437_120 Hb_002495_060 Hb_002495_060 Hb_010488_010--Hb_002495_060 Hb_028707_110 Hb_028707_110 Hb_010488_010--Hb_028707_110 Hb_002276_070 Hb_002276_070 Hb_010488_010--Hb_002276_070 Hb_001408_030 Hb_001408_030 Hb_010488_010--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_010488_010--Hb_008092_050 Hb_001437_120--Hb_028707_110 Hb_001437_120--Hb_001408_030 Hb_001437_120--Hb_002276_070 Hb_008092_060 Hb_008092_060 Hb_001437_120--Hb_008092_060 Hb_000997_140 Hb_000997_140 Hb_001437_120--Hb_000997_140 Hb_003929_220 Hb_003929_220 Hb_001437_120--Hb_003929_220 Hb_000479_170 Hb_000479_170 Hb_002495_060--Hb_000479_170 Hb_002495_060--Hb_002276_070 Hb_002495_060--Hb_001437_120 Hb_002495_060--Hb_028707_110 Hb_002368_070 Hb_002368_070 Hb_002495_060--Hb_002368_070 Hb_028707_110--Hb_000997_140 Hb_000069_490 Hb_000069_490 Hb_028707_110--Hb_000069_490 Hb_010757_030 Hb_010757_030 Hb_028707_110--Hb_010757_030 Hb_003077_130 Hb_003077_130 Hb_028707_110--Hb_003077_130 Hb_028707_110--Hb_003929_220 Hb_002276_070--Hb_002368_070 Hb_002276_070--Hb_028707_110 Hb_004785_070 Hb_004785_070 Hb_002276_070--Hb_004785_070 Hb_001408_030--Hb_008092_050 Hb_001408_030--Hb_008092_060 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240 Hb_008092_050--Hb_008092_060 Hb_005618_150 Hb_005618_150 Hb_008092_050--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_008092_050--Hb_001307_040 Hb_008092_050--Hb_001437_120 Hb_006911_070 Hb_006911_070 Hb_008092_050--Hb_006911_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.79 20.5912 36.3226 12.0728 41.8002 19.7848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68792 4.23411 9.49475 11.6511 94.43

CAGE analysis