Hb_010488_040

Information

Type -
Description -
Location Contig10488: 13283-17184
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07630g
description phosphomannomutase family protein
nr
ID XP_011035818.1
description PREDICTED: phosphomannomutase [Populus euphratica]
swissprot
ID Q1W376
description Phosphomannomutase OS=Glycine max PE=2 SV=1
trembl
ID A9PI53
description Phosphomannomutase OS=Populus trichocarpa GN=POPTR_0014s07630g PE=2 SV=1
Gene Ontology
ID GO:0005829
description phosphomannomutase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01663: 13803-15196
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010488_040 0.0 - - PREDICTED: phosphomannomutase [Populus euphratica]
2 Hb_001005_160 0.1553195764 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000742_190 0.1685730267 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000282_050 0.1691934659 - - calcineurin B, putative [Ricinus communis]
5 Hb_000668_060 0.1695565983 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
6 Hb_004567_010 0.1745543548 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
7 Hb_004117_190 0.176108511 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
8 Hb_000544_030 0.1811950428 - - conserved hypothetical protein [Ricinus communis]
9 Hb_119583_020 0.1850246856 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
10 Hb_084230_010 0.1857676652 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
11 Hb_101146_010 0.1875023111 - - PREDICTED: peregrin-like [Jatropha curcas]
12 Hb_000580_100 0.1883933404 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
13 Hb_001123_110 0.1909631543 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001195_640 0.1943553264 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
15 Hb_004162_230 0.1944519394 - - PREDICTED: histone H2B [Jatropha curcas]
16 Hb_007044_090 0.194872219 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
17 Hb_002960_150 0.194961779 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
18 Hb_089140_120 0.1979962726 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
19 Hb_001454_070 0.1982933567 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
20 Hb_000743_030 0.1986864295 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]

Gene co-expression network

sample Hb_010488_040 Hb_010488_040 Hb_001005_160 Hb_001005_160 Hb_010488_040--Hb_001005_160 Hb_000742_190 Hb_000742_190 Hb_010488_040--Hb_000742_190 Hb_000282_050 Hb_000282_050 Hb_010488_040--Hb_000282_050 Hb_000668_060 Hb_000668_060 Hb_010488_040--Hb_000668_060 Hb_004567_010 Hb_004567_010 Hb_010488_040--Hb_004567_010 Hb_004117_190 Hb_004117_190 Hb_010488_040--Hb_004117_190 Hb_007894_210 Hb_007894_210 Hb_001005_160--Hb_007894_210 Hb_000438_090 Hb_000438_090 Hb_001005_160--Hb_000438_090 Hb_000926_230 Hb_000926_230 Hb_001005_160--Hb_000926_230 Hb_001545_050 Hb_001545_050 Hb_001005_160--Hb_001545_050 Hb_002411_080 Hb_002411_080 Hb_001005_160--Hb_002411_080 Hb_071781_010 Hb_071781_010 Hb_000742_190--Hb_071781_010 Hb_008119_030 Hb_008119_030 Hb_000742_190--Hb_008119_030 Hb_003605_040 Hb_003605_040 Hb_000742_190--Hb_003605_040 Hb_002818_050 Hb_002818_050 Hb_000742_190--Hb_002818_050 Hb_002498_240 Hb_002498_240 Hb_000742_190--Hb_002498_240 Hb_188281_030 Hb_188281_030 Hb_000282_050--Hb_188281_030 Hb_000622_130 Hb_000622_130 Hb_000282_050--Hb_000622_130 Hb_007741_130 Hb_007741_130 Hb_000282_050--Hb_007741_130 Hb_007044_090 Hb_007044_090 Hb_000282_050--Hb_007044_090 Hb_124677_030 Hb_124677_030 Hb_000282_050--Hb_124677_030 Hb_000282_050--Hb_004567_010 Hb_000035_080 Hb_000035_080 Hb_000668_060--Hb_000035_080 Hb_000320_050 Hb_000320_050 Hb_000668_060--Hb_000320_050 Hb_003964_080 Hb_003964_080 Hb_000668_060--Hb_003964_080 Hb_000260_650 Hb_000260_650 Hb_000668_060--Hb_000260_650 Hb_074399_010 Hb_074399_010 Hb_000668_060--Hb_074399_010 Hb_000940_210 Hb_000940_210 Hb_000668_060--Hb_000940_210 Hb_002740_080 Hb_002740_080 Hb_004567_010--Hb_002740_080 Hb_003540_050 Hb_003540_050 Hb_004567_010--Hb_003540_050 Hb_000152_600 Hb_000152_600 Hb_004567_010--Hb_000152_600 Hb_005535_080 Hb_005535_080 Hb_004567_010--Hb_005535_080 Hb_000072_300 Hb_000072_300 Hb_004567_010--Hb_000072_300 Hb_000753_160 Hb_000753_160 Hb_004567_010--Hb_000753_160 Hb_000580_100 Hb_000580_100 Hb_004117_190--Hb_000580_100 Hb_004117_190--Hb_007741_130 Hb_005054_220 Hb_005054_220 Hb_004117_190--Hb_005054_220 Hb_101146_010 Hb_101146_010 Hb_004117_190--Hb_101146_010 Hb_004117_190--Hb_003540_050 Hb_001268_340 Hb_001268_340 Hb_004117_190--Hb_001268_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.83824 7.76732 30.8875 30.2548 5.84121 6.34748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.25305 12.3837 0.961634 2.06999 4.43943

CAGE analysis