Hb_010490_030

Information

Type -
Description -
Location Contig10490: 11845-13384
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010490_030 0.0 - - -
2 Hb_074197_060 0.2359825761 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
3 Hb_005779_050 0.2833034232 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
4 Hb_007105_010 0.2897553016 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
5 Hb_004102_120 0.293483364 - - -
6 Hb_062827_010 0.2956859324 - - -
7 Hb_003861_130 0.302064756 - - -
8 Hb_097730_010 0.3047052626 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
9 Hb_002719_070 0.3069295186 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_011692_030 0.3076090925 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
11 Hb_020763_020 0.3079266628 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
12 Hb_075888_010 0.3122800718 - - PREDICTED: 25S rRNA (cytosine-C(5))-methyltransferase nop2-like [Solanum lycopersicum]
13 Hb_001623_030 0.3135434579 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_003041_040 0.3206339655 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
15 Hb_135978_010 0.3270022136 - - hypothetical protein EUGRSUZ_J026621, partial [Eucalyptus grandis]
16 Hb_001112_020 0.3390142676 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
17 Hb_013272_010 0.3418671712 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_010288_040 0.3561495442 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
19 Hb_094245_010 0.3577401838 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
20 Hb_014175_010 0.3698239327 - - Uncharacterized protein TCM_033221 [Theobroma cacao]

Gene co-expression network

sample Hb_010490_030 Hb_010490_030 Hb_074197_060 Hb_074197_060 Hb_010490_030--Hb_074197_060 Hb_005779_050 Hb_005779_050 Hb_010490_030--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010490_030--Hb_007105_010 Hb_004102_120 Hb_004102_120 Hb_010490_030--Hb_004102_120 Hb_062827_010 Hb_062827_010 Hb_010490_030--Hb_062827_010 Hb_003861_130 Hb_003861_130 Hb_010490_030--Hb_003861_130 Hb_049901_010 Hb_049901_010 Hb_074197_060--Hb_049901_010 Hb_034454_020 Hb_034454_020 Hb_074197_060--Hb_034454_020 Hb_003041_040 Hb_003041_040 Hb_074197_060--Hb_003041_040 Hb_000425_050 Hb_000425_050 Hb_074197_060--Hb_000425_050 Hb_009563_020 Hb_009563_020 Hb_074197_060--Hb_009563_020 Hb_109268_010 Hb_109268_010 Hb_005779_050--Hb_109268_010 Hb_001022_060 Hb_001022_060 Hb_005779_050--Hb_001022_060 Hb_010288_040 Hb_010288_040 Hb_005779_050--Hb_010288_040 Hb_005779_050--Hb_007105_010 Hb_006907_120 Hb_006907_120 Hb_005779_050--Hb_006907_120 Hb_128051_010 Hb_128051_010 Hb_005779_050--Hb_128051_010 Hb_007105_010--Hb_006907_120 Hb_001189_060 Hb_001189_060 Hb_007105_010--Hb_001189_060 Hb_007105_010--Hb_010288_040 Hb_000077_240 Hb_000077_240 Hb_007105_010--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_007105_010--Hb_003398_030 Hb_004102_120--Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_004102_120--Hb_001623_030 Hb_004102_120--Hb_062827_010 Hb_135978_010 Hb_135978_010 Hb_004102_120--Hb_135978_010 Hb_011692_030 Hb_011692_030 Hb_004102_120--Hb_011692_030 Hb_020763_020 Hb_020763_020 Hb_004102_120--Hb_020763_020 Hb_062827_010--Hb_011692_030 Hb_062827_010--Hb_020763_020 Hb_062827_010--Hb_003041_040 Hb_062827_010--Hb_003861_130 Hb_062827_010--Hb_001623_030 Hb_003861_130--Hb_001623_030 Hb_003861_130--Hb_135978_010 Hb_003861_130--Hb_011692_030 Hb_003861_130--Hb_020763_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.110096 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149954 0 0 0.0493028 0

CAGE analysis