Hb_010490_060

Information

Type -
Description -
Location Contig10490: 29942-34911
Sequence    

Annotation

kegg
ID mus:103975149
description uncharacterized protein LOC103975149
nr
ID XP_012442006.1
description PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A5AMK2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010490_060 0.0 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
2 Hb_000442_170 0.1509368687 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_004520_010 0.1619609941 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_009848_050 0.1657642002 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
5 Hb_000137_060 0.1661715901 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
6 Hb_000260_730 0.1677730079 - - -
7 Hb_002888_060 0.1796462296 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
8 Hb_001963_110 0.1827859313 - - -
9 Hb_009848_060 0.1837347112 - - unknown [Glycine max]
10 Hb_008834_010 0.1843140992 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
11 Hb_009230_020 0.1848645656 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
12 Hb_007885_110 0.1873811278 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
13 Hb_001301_010 0.188690457 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_001677_230 0.190137297 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
15 Hb_017225_030 0.1919263782 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
16 Hb_000732_180 0.1940956265 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
17 Hb_142522_040 0.1941995264 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_001619_010 0.1960851693 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
19 Hb_001005_040 0.1981243952 - - -
20 Hb_000454_150 0.1986617865 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010490_060 Hb_010490_060 Hb_000442_170 Hb_000442_170 Hb_010490_060--Hb_000442_170 Hb_004520_010 Hb_004520_010 Hb_010490_060--Hb_004520_010 Hb_009848_050 Hb_009848_050 Hb_010490_060--Hb_009848_050 Hb_000137_060 Hb_000137_060 Hb_010490_060--Hb_000137_060 Hb_000260_730 Hb_000260_730 Hb_010490_060--Hb_000260_730 Hb_002888_060 Hb_002888_060 Hb_010490_060--Hb_002888_060 Hb_001301_010 Hb_001301_010 Hb_000442_170--Hb_001301_010 Hb_000776_020 Hb_000776_020 Hb_000442_170--Hb_000776_020 Hb_001963_110 Hb_001963_110 Hb_000442_170--Hb_001963_110 Hb_003992_220 Hb_003992_220 Hb_000442_170--Hb_003992_220 Hb_006594_080 Hb_006594_080 Hb_000442_170--Hb_006594_080 Hb_000191_100 Hb_000191_100 Hb_000442_170--Hb_000191_100 Hb_000820_100 Hb_000820_100 Hb_004520_010--Hb_000820_100 Hb_035651_010 Hb_035651_010 Hb_004520_010--Hb_035651_010 Hb_001385_070 Hb_001385_070 Hb_004520_010--Hb_001385_070 Hb_005920_030 Hb_005920_030 Hb_004520_010--Hb_005920_030 Hb_000123_340 Hb_000123_340 Hb_004520_010--Hb_000123_340 Hb_007543_020 Hb_007543_020 Hb_004520_010--Hb_007543_020 Hb_009848_060 Hb_009848_060 Hb_009848_050--Hb_009848_060 Hb_185058_020 Hb_185058_020 Hb_009848_050--Hb_185058_020 Hb_014324_010 Hb_014324_010 Hb_009848_050--Hb_014324_010 Hb_009848_050--Hb_000137_060 Hb_001571_020 Hb_001571_020 Hb_009848_050--Hb_001571_020 Hb_000465_180 Hb_000465_180 Hb_000137_060--Hb_000465_180 Hb_001288_050 Hb_001288_050 Hb_000137_060--Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_000137_060--Hb_000567_150 Hb_000137_060--Hb_001571_020 Hb_001005_040 Hb_001005_040 Hb_000137_060--Hb_001005_040 Hb_007130_010 Hb_007130_010 Hb_000137_060--Hb_007130_010 Hb_017225_030 Hb_017225_030 Hb_000260_730--Hb_017225_030 Hb_008834_010 Hb_008834_010 Hb_000260_730--Hb_008834_010 Hb_029727_010 Hb_029727_010 Hb_000260_730--Hb_029727_010 Hb_001856_280 Hb_001856_280 Hb_000260_730--Hb_001856_280 Hb_000260_730--Hb_001005_040 Hb_000169_100 Hb_000169_100 Hb_000260_730--Hb_000169_100 Hb_001677_230 Hb_001677_230 Hb_002888_060--Hb_001677_230 Hb_001141_040 Hb_001141_040 Hb_002888_060--Hb_001141_040 Hb_002888_060--Hb_000191_100 Hb_001496_120 Hb_001496_120 Hb_002888_060--Hb_001496_120 Hb_002888_060--Hb_001963_110 Hb_001268_300 Hb_001268_300 Hb_002888_060--Hb_001268_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.120434 0.0626736 0.0673506 0.0230489 0.0107908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0199985 0.314562 0.468476

CAGE analysis