Hb_010504_020

Information

Type -
Description -
Location Contig10504: 50148-51629
Sequence    

Annotation

kegg
ID mus:103972374
description calmodulin
nr
ID XP_003632230.1
description PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
swissprot
ID P17928
description Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2
trembl
ID M0VT07
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01716: 50153-54938 , PASA_asmbl_01717: 52558-52721
cDNA
(Sanger)
(ID:Location)		 001_G22.ab1: 50471-54824 , 011_M18.ab1: 50473-54938 , 013_I23.ab1: 50394-54820 , 015_O14.ab1: 50739-54860 , 023_J09.ab1: 50412-54810 , 024_A07.ab1: 50511-54938 , 030_G15.ab1: 50367-54826 , 030_P01.ab1: 50326-54859 , 031_D11.ab1: 50384-54867 , 031_K19.ab1: 50371-54861

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010504_020 0.0 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
2 Hb_005305_080 0.0421390026 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
3 Hb_000510_130 0.0489372582 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
4 Hb_020956_020 0.0534327939 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
5 Hb_002477_330 0.0625827283 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
6 Hb_159809_020 0.0630502554 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000959_260 0.0633888658 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
8 Hb_003125_010 0.0646909543 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
9 Hb_005289_030 0.0671627229 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
10 Hb_000398_180 0.0686864023 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
11 Hb_002835_080 0.070149664 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
12 Hb_000243_030 0.0703923007 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
13 Hb_006541_030 0.0725813475 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
14 Hb_003092_040 0.0726513171 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
15 Hb_032202_190 0.0726849098 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
16 Hb_004254_120 0.0735256075 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000103_090 0.0738458823 - - PREDICTED: protein RDM1 [Jatropha curcas]
18 Hb_004128_190 0.075443231 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
19 Hb_033834_040 0.0756214043 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005663_060 0.07564257 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]

Gene co-expression network

sample Hb_010504_020 Hb_010504_020 Hb_005305_080 Hb_005305_080 Hb_010504_020--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_010504_020--Hb_000510_130 Hb_020956_020 Hb_020956_020 Hb_010504_020--Hb_020956_020 Hb_002477_330 Hb_002477_330 Hb_010504_020--Hb_002477_330 Hb_159809_020 Hb_159809_020 Hb_010504_020--Hb_159809_020 Hb_000959_260 Hb_000959_260 Hb_010504_020--Hb_000959_260 Hb_005618_170 Hb_005618_170 Hb_005305_080--Hb_005618_170 Hb_005305_080--Hb_000510_130 Hb_004254_120 Hb_004254_120 Hb_005305_080--Hb_004254_120 Hb_032202_190 Hb_032202_190 Hb_005305_080--Hb_032202_190 Hb_000876_070 Hb_000876_070 Hb_005305_080--Hb_000876_070 Hb_000510_130--Hb_020956_020 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_096563_010 Hb_096563_010 Hb_020956_020--Hb_096563_010 Hb_029866_090 Hb_029866_090 Hb_020956_020--Hb_029866_090 Hb_001226_160 Hb_001226_160 Hb_020956_020--Hb_001226_160 Hb_020956_020--Hb_005305_080 Hb_148644_010 Hb_148644_010 Hb_002477_330--Hb_148644_010 Hb_000103_090 Hb_000103_090 Hb_002477_330--Hb_000103_090 Hb_004128_190 Hb_004128_190 Hb_002477_330--Hb_004128_190 Hb_000045_090 Hb_000045_090 Hb_002477_330--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_002477_330--Hb_143398_010 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_002835_080 Hb_002835_080 Hb_000959_260--Hb_002835_080 Hb_012008_020 Hb_012008_020 Hb_000959_260--Hb_012008_020 Hb_000959_260--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_000959_260--Hb_001489_150 Hb_000959_260--Hb_002477_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
514.079 340.18 249.324 418.002 503.97 809.26
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
817.839 866.027 699.599 331.438 293.505

CAGE analysis