Hb_010515_030

Information

Type -
Description -
Location Contig10515: 39908-40954
Sequence    

Annotation

kegg
ID cit:102621929
description G2/mitotic-specific cyclin-1-like
nr
ID XP_012076013.1
description PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
swissprot
ID Q0JIF2
description Cyclin-B1-1 OS=Oryza sativa subsp. japonica GN=CYCB1-1 PE=2 SV=2
trembl
ID A0A067KRV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11114 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01755: 29134-39341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010515_030 0.0 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
2 Hb_079751_010 0.2816138536 - - r2r3-myb transcription factor, putative [Ricinus communis]
3 Hb_001221_280 0.304724838 - - -
4 Hb_002157_200 0.318614858 - - hypothetical protein VITISV_040170 [Vitis vinifera]
5 Hb_000856_160 0.3369973916 - - -
6 Hb_000215_370 0.3380205108 - - myoinositol oxygenase, putative [Ricinus communis]
7 Hb_005656_030 0.3394375749 transcription factor TF Family: MYB-related r2r3-myb transcription factor, putative [Ricinus communis]
8 Hb_006569_070 0.3520971103 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_003581_180 0.3605177795 - - Pectate lyase precursor, putative [Ricinus communis]
10 Hb_098785_010 0.3641866457 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
11 Hb_003799_020 0.3784248742 - - hypothetical protein VITISV_003261 [Vitis vinifera]
12 Hb_000125_220 0.3839127158 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
13 Hb_001913_020 0.3843701833 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003659_020 0.3923805164 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_001008_140 0.3948534663 - - -
16 Hb_008035_050 0.3949721774 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
17 Hb_043623_020 0.3984117896 - - hypothetical protein JCGZ_17692 [Jatropha curcas]
18 Hb_000025_170 0.3992957183 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004108_030 0.3997842101 - - -
20 Hb_139691_010 0.4001058806 - - -

Gene co-expression network

sample Hb_010515_030 Hb_010515_030 Hb_079751_010 Hb_079751_010 Hb_010515_030--Hb_079751_010 Hb_001221_280 Hb_001221_280 Hb_010515_030--Hb_001221_280 Hb_002157_200 Hb_002157_200 Hb_010515_030--Hb_002157_200 Hb_000856_160 Hb_000856_160 Hb_010515_030--Hb_000856_160 Hb_000215_370 Hb_000215_370 Hb_010515_030--Hb_000215_370 Hb_005656_030 Hb_005656_030 Hb_010515_030--Hb_005656_030 Hb_079751_010--Hb_000215_370 Hb_002722_010 Hb_002722_010 Hb_079751_010--Hb_002722_010 Hb_134015_010 Hb_134015_010 Hb_079751_010--Hb_134015_010 Hb_000544_160 Hb_000544_160 Hb_079751_010--Hb_000544_160 Hb_000080_160 Hb_000080_160 Hb_079751_010--Hb_000080_160 Hb_043623_020 Hb_043623_020 Hb_001221_280--Hb_043623_020 Hb_001143_260 Hb_001143_260 Hb_001221_280--Hb_001143_260 Hb_003799_020 Hb_003799_020 Hb_001221_280--Hb_003799_020 Hb_098785_010 Hb_098785_010 Hb_001221_280--Hb_098785_010 Hb_006569_070 Hb_006569_070 Hb_001221_280--Hb_006569_070 Hb_001221_280--Hb_000856_160 Hb_003897_020 Hb_003897_020 Hb_002157_200--Hb_003897_020 Hb_003605_140 Hb_003605_140 Hb_002157_200--Hb_003605_140 Hb_001049_080 Hb_001049_080 Hb_002157_200--Hb_001049_080 Hb_000392_200 Hb_000392_200 Hb_002157_200--Hb_000392_200 Hb_000010_450 Hb_000010_450 Hb_002157_200--Hb_000010_450 Hb_003659_020 Hb_003659_020 Hb_000856_160--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_000856_160--Hb_008035_050 Hb_139691_010 Hb_139691_010 Hb_000856_160--Hb_139691_010 Hb_000392_290 Hb_000392_290 Hb_000856_160--Hb_000392_290 Hb_001789_170 Hb_001789_170 Hb_000856_160--Hb_001789_170 Hb_002999_040 Hb_002999_040 Hb_000856_160--Hb_002999_040 Hb_001946_350 Hb_001946_350 Hb_000215_370--Hb_001946_350 Hb_000215_370--Hb_002722_010 Hb_002518_060 Hb_002518_060 Hb_000215_370--Hb_002518_060 Hb_000215_370--Hb_000544_160 Hb_000025_170 Hb_000025_170 Hb_000215_370--Hb_000025_170 Hb_003159_100 Hb_003159_100 Hb_005656_030--Hb_003159_100 Hb_000413_290 Hb_000413_290 Hb_005656_030--Hb_000413_290 Hb_000107_470 Hb_000107_470 Hb_005656_030--Hb_000107_470 Hb_001913_020 Hb_001913_020 Hb_005656_030--Hb_001913_020 Hb_000181_410 Hb_000181_410 Hb_005656_030--Hb_000181_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0429951 0 0.160945 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.110664 0.0251568 0

CAGE analysis