Hb_010519_050

Information

Type -
Description -
Location Contig10519: 58136-63678
Sequence    

Annotation

kegg
ID rcu:RCOM_1001220
description galactokinase, putative (EC:2.7.1.157)
nr
ID XP_002519253.1
description galactokinase, putative [Ricinus communis]
swissprot
ID Q9SEE5
description Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2
trembl
ID B9RZT4
description Galactokinase, putative OS=Ricinus communis GN=RCOM_1001220 PE=3 SV=1
Gene Ontology
ID GO:0005737
description galactokinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01761: 58193-63579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010519_050 0.0 - - galactokinase, putative [Ricinus communis]
2 Hb_000930_030 0.0853860054 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
3 Hb_007336_010 0.0896034159 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
4 Hb_005396_150 0.0937898699 - - protein binding protein, putative [Ricinus communis]
5 Hb_002232_410 0.0972989317 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
6 Hb_003376_330 0.0973896836 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
7 Hb_005634_010 0.0980749408 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_002445_060 0.0996891418 - - arf gtpase-activating protein, putative [Ricinus communis]
9 Hb_001252_120 0.102875716 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
10 Hb_023371_020 0.1030465282 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
11 Hb_004586_300 0.1046069578 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
12 Hb_000732_010 0.1046844726 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
13 Hb_002685_110 0.1052735394 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
14 Hb_168978_010 0.1060489626 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
15 Hb_001141_420 0.1067706406 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
16 Hb_001205_240 0.1078683146 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
17 Hb_011218_090 0.1078826049 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
18 Hb_000015_040 0.1085257189 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
19 Hb_008725_230 0.1086784551 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_002234_180 0.1088624797 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010519_050 Hb_010519_050 Hb_000930_030 Hb_000930_030 Hb_010519_050--Hb_000930_030 Hb_007336_010 Hb_007336_010 Hb_010519_050--Hb_007336_010 Hb_005396_150 Hb_005396_150 Hb_010519_050--Hb_005396_150 Hb_002232_410 Hb_002232_410 Hb_010519_050--Hb_002232_410 Hb_003376_330 Hb_003376_330 Hb_010519_050--Hb_003376_330 Hb_005634_010 Hb_005634_010 Hb_010519_050--Hb_005634_010 Hb_000930_030--Hb_002232_410 Hb_000732_010 Hb_000732_010 Hb_000930_030--Hb_000732_010 Hb_005054_230 Hb_005054_230 Hb_000930_030--Hb_005054_230 Hb_000002_340 Hb_000002_340 Hb_000930_030--Hb_000002_340 Hb_005271_220 Hb_005271_220 Hb_000930_030--Hb_005271_220 Hb_001492_020 Hb_001492_020 Hb_007336_010--Hb_001492_020 Hb_002235_170 Hb_002235_170 Hb_007336_010--Hb_002235_170 Hb_001205_240 Hb_001205_240 Hb_007336_010--Hb_001205_240 Hb_000363_240 Hb_000363_240 Hb_007336_010--Hb_000363_240 Hb_000327_270 Hb_000327_270 Hb_007336_010--Hb_000327_270 Hb_001511_240 Hb_001511_240 Hb_007336_010--Hb_001511_240 Hb_007747_080 Hb_007747_080 Hb_005396_150--Hb_007747_080 Hb_005396_150--Hb_005634_010 Hb_000049_210 Hb_000049_210 Hb_005396_150--Hb_000049_210 Hb_112198_010 Hb_112198_010 Hb_005396_150--Hb_112198_010 Hb_008725_230 Hb_008725_230 Hb_005396_150--Hb_008725_230 Hb_000140_290 Hb_000140_290 Hb_005396_150--Hb_000140_290 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_002232_410--Hb_000732_010 Hb_002232_410--Hb_005271_220 Hb_000028_370 Hb_000028_370 Hb_002232_410--Hb_000028_370 Hb_000270_490 Hb_000270_490 Hb_003376_330--Hb_000270_490 Hb_073973_100 Hb_073973_100 Hb_003376_330--Hb_073973_100 Hb_023732_030 Hb_023732_030 Hb_003376_330--Hb_023732_030 Hb_003376_330--Hb_002232_410 Hb_026198_070 Hb_026198_070 Hb_003376_330--Hb_026198_070 Hb_003693_070 Hb_003693_070 Hb_003376_330--Hb_003693_070 Hb_000556_120 Hb_000556_120 Hb_005634_010--Hb_000556_120 Hb_005634_010--Hb_000140_290 Hb_000329_060 Hb_000329_060 Hb_005634_010--Hb_000329_060 Hb_000011_060 Hb_000011_060 Hb_005634_010--Hb_000011_060 Hb_000836_460 Hb_000836_460 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5021 21.2813 17.0333 31.027 13.0377 17.5704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.6749 14.5289 24.2939 22.4773 18.9005

CAGE analysis