Hb_010521_020

Information

Type -
Description -
Location Contig10521: 35867-37591
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01769: 36430-36891 , PASA_asmbl_01770: 37190-37672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010521_020 0.0 - - -
2 Hb_010521_030 0.1832167202 - - -
3 Hb_001195_190 0.1920035587 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005568_100 0.218695347 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
5 Hb_000789_130 0.2348698898 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
6 Hb_000010_270 0.2481275268 - - PREDICTED: vignain [Jatropha curcas]
7 Hb_004296_010 0.2485601176 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
8 Hb_000941_140 0.2486708478 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
9 Hb_104812_010 0.2493604424 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
10 Hb_000505_110 0.2542806549 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
11 Hb_002232_300 0.2582327153 - - Squalene monooxygenase, putative [Ricinus communis]
12 Hb_003097_080 0.2593139376 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
13 Hb_113673_010 0.2606964636 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
14 Hb_000260_370 0.2652552198 - - protein phosphatase-1, putative [Ricinus communis]
15 Hb_013818_030 0.2683844785 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006618_040 0.2714087849 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
17 Hb_001051_090 0.2723292004 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
18 Hb_006083_060 0.2724770132 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
19 Hb_007333_030 0.2754505992 - - -
20 Hb_001269_310 0.2755636334 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]

Gene co-expression network

sample Hb_010521_020 Hb_010521_020 Hb_010521_030 Hb_010521_030 Hb_010521_020--Hb_010521_030 Hb_001195_190 Hb_001195_190 Hb_010521_020--Hb_001195_190 Hb_005568_100 Hb_005568_100 Hb_010521_020--Hb_005568_100 Hb_000789_130 Hb_000789_130 Hb_010521_020--Hb_000789_130 Hb_000010_270 Hb_000010_270 Hb_010521_020--Hb_000010_270 Hb_004296_010 Hb_004296_010 Hb_010521_020--Hb_004296_010 Hb_003175_110 Hb_003175_110 Hb_010521_030--Hb_003175_110 Hb_113673_010 Hb_113673_010 Hb_010521_030--Hb_113673_010 Hb_104812_010 Hb_104812_010 Hb_010521_030--Hb_104812_010 Hb_000883_030 Hb_000883_030 Hb_010521_030--Hb_000883_030 Hb_119622_010 Hb_119622_010 Hb_010521_030--Hb_119622_010 Hb_001195_190--Hb_004296_010 Hb_000505_110 Hb_000505_110 Hb_001195_190--Hb_000505_110 Hb_001767_040 Hb_001767_040 Hb_001195_190--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_001195_190--Hb_001269_310 Hb_000421_130 Hb_000421_130 Hb_001195_190--Hb_000421_130 Hb_014919_020 Hb_014919_020 Hb_005568_100--Hb_014919_020 Hb_005568_100--Hb_000789_130 Hb_002232_300 Hb_002232_300 Hb_005568_100--Hb_002232_300 Hb_005548_030 Hb_005548_030 Hb_005568_100--Hb_005548_030 Hb_001944_030 Hb_001944_030 Hb_005568_100--Hb_001944_030 Hb_000816_010 Hb_000816_010 Hb_000789_130--Hb_000816_010 Hb_000984_250 Hb_000984_250 Hb_000789_130--Hb_000984_250 Hb_000789_130--Hb_000505_110 Hb_000453_140 Hb_000453_140 Hb_000789_130--Hb_000453_140 Hb_001153_050 Hb_001153_050 Hb_000010_270--Hb_001153_050 Hb_073973_150 Hb_073973_150 Hb_000010_270--Hb_073973_150 Hb_002475_040 Hb_002475_040 Hb_000010_270--Hb_002475_040 Hb_019641_030 Hb_019641_030 Hb_000010_270--Hb_019641_030 Hb_005323_010 Hb_005323_010 Hb_000010_270--Hb_005323_010 Hb_004355_040 Hb_004355_040 Hb_000010_270--Hb_004355_040 Hb_000941_140 Hb_000941_140 Hb_004296_010--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_004296_010--Hb_006618_040 Hb_000260_370 Hb_000260_370 Hb_004296_010--Hb_000260_370 Hb_004296_010--Hb_001269_310 Hb_002999_060 Hb_002999_060 Hb_004296_010--Hb_002999_060 Hb_013394_060 Hb_013394_060 Hb_004296_010--Hb_013394_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55933 1.76853 2.69801 2.67901 8.19638 0.394225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.44324 1.7276 2.0227

CAGE analysis